Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05494 ATGGAGAATGAATGTAACTGGGAGCACAACACACTCATTAATGAGCTAATTCAAGGAATGGATGTAGCAAAGAGATTGAAGGAAGAGTTGAGGACACCGTATTCCCTCGACACAAGGGATTTACAGGTGCAGATGATATTATCTTCTTACGAAAAGGCTTTACGAATTCTAAGATGTAATGAATCGACTTCTAAGTCGCAGACCATAACTCCATTAACAACTTCGTTACCGGAGTCCCCTGCGTCTACCAATGGTAGTCCGCTGAGCGAGGACTTTGACGGAGCTATCCAAGAGCACCGGGAGGTTAAAAACAAATCAAAGAAAAGAAAGGTTGCGCCCAAATTGGTGGATCAGATAAAAGTTAGCTGTGAAAGTGGCCTTGAAGGACCACATGAAGATGGCTATAACTGGAGAAAATATGGTCAGAAAGATATCCTCAGTGCCAAACATCCAAGAAGTTACTATCGGTGCACCTTCCGCAACACACAGAACTGCTGGGCCACAAAGCAAGTGCAGAGATCAGATGAAGATCCCACAATATTCGACATAACCTATAGAGGAAAGCATACCTGTTCTCAGGGAAACAATGTCATTGAAGCATATAAGTCACAAGAAAAACAAGAGAAAGTAAATAGTTATAATAATAATGATATTCAACATGCACACCCATCACAAGAAAGCTTTACAAACTTCAGCAACACCTTGACTGTCAAAACGGATAATCTGGGAAACGAACAAAGTCCTTTCCCCTTCCCTTCCACTTCATTTGGATACGCAACACAAGAAAACCAAAGCTGGGTTCCTTCAGGCTTAGGAAATGATTCCTTCTTGAGCAGCCTTTTCCAAACACACTTATTATCTCCAGTAACACCCGAATCAAACTATTTCTCATCTCCAACTTTCCAGATGAATGACTTTGATGGGTTCTATAACAATCCTCGTTCAGAATCAGACATTACAGAGATCATTTCCACCAACACATCAGTCACAAATTCTCCAATTCCCAATTTTCATTTTCCACTCGATTCAGCGGAAATCGATCCAAATTTCCCTTTCAATACTCCAGGCTTTTTCTCCTAA 1080 0.4102 MENECNWEHNTLINELIQGMDVAKRLKEELRTPYSLDTRDLQVQMILSSYEKALRILRCNESTSKSQTITPLTTSLPESPASTNGSPLSEDFDGAIQEHREVKNKSKKRKVAPKLVDQIKVSCESGLEGPHEDGYNWRKYGQKDILSAKHPRSYYRCTFRNTQNCWATKQVQRSDEDPTIFDITYRGKHTCSQGNNVIEAYKSQEKQEKVNSYNNNDIQHAHPSQESFTNFSNTLTVKTDNLGNEQSPFPFPSTSFGYATQENQSWVPSGLGNDSFLSSLFQTHLLSPVTPESNYFSSPTFQMNDFDGFYNNPRSESDITEIISTNTSVTNSPIPNFHFPLDSAEIDPNFPFNTPGFFS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05494 359 MobiDBLite consensus disorder prediction 67 87 - -
Trre8g05494 359 ProSiteProfiles WRKY domain profile. 126 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g05494 359 SMART WRKY_cls 131 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g05494 359 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 269 IPR044810 GO:0003700
Trre8g05494 359 Pfam WRKY DNA -binding domain 132 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g05494 359 SUPERFAMILY WRKY DNA-binding domain 130 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g05494 359 Gene3D WRKY domain 117 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g05494 359 FunFam WRKY transcription factor 53 117 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05494 Trre-Chr8 56631847 56633132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05494 6 351 WRKY Transcription Factor Family AT4G11070 37.921 1.30e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre8g05494 WRKY 4.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05494 - - gmx:100815760 511.146