Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05486 ATGGAAAATCATGACGATTCTGTTGATGTGGATATTGAGTCCATAAGTTCCAGTGAACCTGATAGTGTTGATATTGAAATGGATGATGATGAGAGTGAATCAGGGTCTACTGCGGATGGCAAAGAATCATCTGATGAGGGAAATGTTGATGGAGATGCAGTTGCACGTCATAGTAAGGTAAGGTTTGATTCCATGACCGCCGATGATATTCGTTCTATGGAATTTTCTAATTTAAGTGAAGCTTATGACTTTTATTACCGCTATGGTAAATATTATGGTTTTCCTATTAGGAAAAGTGATAATAGGAGAAGCAAATGTAAAACAAAAATAACAATGAAGCAGTACGTATGCAACAAAGCTGGTTTAAGAGATACGAAACACTTAGTTAGGTTAGATAGGAAAATAGAACATAGACGTACGAGCCGTACTAATTGTCAAGCTAGGTTGCGTGTGAAATACCATGCTGCAAAGGGTAAATATGTAGTAGCAATTTTTGTAGAGGCTCACAACCATGAATTAACCCCAGCTAGGTTTGTTCACTTGCACCCATTGTTTCACAATATCTCTGAGGCTGATAAGGCACAGATTGATGGTCTTCAGAGCCATGGTATTAGAACATGTCATATTATGGGGTACATGGTTGCGCAGAAGGGTGGATATGCTGATACGGCTACAGATCCGTTGCTATTTGCTGAGTATGATGTCGACAACAGTGATGGAAGAATGAAAACACTATTTTGGGCTGATGGACATAGTAAACAACCACAGGCAGTGATAACAGATGGAGATGGGGCAATGAGGGAAGCTATAAAACAGGTATTTCCTGATGCGACCCATAGAAAGGCAATGTACTCAAATTTTTCAAAAGATGAATTTGAAGAGTACTGGTCACAGATGATTAAAGCAACTGGAATGGAAGGAAATCCTTGGGTTCTCAAAACGTACAATAATAGGTCAATGTGGGCAACTGCATATCTACGTGATCAGTTTTTCGGACGCTTAAGAACGACTTCTCAATGTGAAGCGGTGAATGCAATTATCAAGACTTATGTGAGAAAGAAAGGATGCATTTTTGAATTTATGCACAACTATGATGAGGCACTTAGTGGTTATAGAAATAATGAATTGGCCGGCGAATTGATAGTTAAGGATAAAACTGAGGTCGGGGCTACGAAGATTTATAAGTTAACTAAATATTGTAGGGATGATTATGAAAGAAATGTTGTTTATAATGGTTCGACATTGGAATGTTCATGTAAGTTGTTTGATTCTCGTGGCATTCCATGTTCGCATGTATTTTATGTAATGAAAGAGGAACATGTTGATCATATTCCAAGCAATTTGGTTTTGTCGCGATGGACCAAGGATGCCAAAATTGATTATTTGAACACTGTGAATTGTAAAGATAATGTTGATTCGAGCATGGTTGAGCAAGCCCGTTTTGCATCATATTGTTCGGTTTTAACAGATTTTAGCAAAGAAGCTTCAAAAAAGGATGGTGTTTATGGACAAATAATGGAAGACCTGATGAAGTTAAAAATAAAGTATTGCAGTAAAGATGATCCTGCTATTGGGACACAGAAATCAGTAGTAGGTGATCCATTGCTGGCGAAGAATAAAGGTGCTCCGAAGAAGCCAAAAAAGAACGAAACTAAAACTGCCAGGCGGCGTTCAAACTGTAAAAACAAAACTGATGATGGGAGGAGATGTTCGGGTACACAACAAACCAAAGAACAATCGGGAGAAGCAAATGTTCATTTGGACTCCATGTCGATATCAGATTCTGTAAGCCTAATTGCTGAGAAAAAAAAGAGAAAAGCAAGTGGCAATGGTGAAACTAGTGTGCAGAACAATCGTTCATGTGGCGCTAATGTCGCAACAACACCACCTATTGATTTGACAACCACAAGCAGAAATTTCAATCCGATTTATGGACTTCAACCTGTGATGCCTATGTTAAATCCGATGATTCAACCGATGCATCTACCGCCCATATACCCAATGTATGGACTGCAACATGGAATGAGTGCTGGTCAAAATTCAAATTCTCACTATGGTCTGCTACAGCAAGTTATGGAAACTGCTAGGAATGATTGA 2097 0.3872 MENHDDSVDVDIESISSSEPDSVDIEMDDDESESGSTADGKESSDEGNVDGDAVARHSKVRFDSMTADDIRSMEFSNLSEAYDFYYRYGKYYGFPIRKSDNRRSKCKTKITMKQYVCNKAGLRDTKHLVRLDRKIEHRRTSRTNCQARLRVKYHAAKGKYVVAIFVEAHNHELTPARFVHLHPLFHNISEADKAQIDGLQSHGIRTCHIMGYMVAQKGGYADTATDPLLFAEYDVDNSDGRMKTLFWADGHSKQPQAVITDGDGAMREAIKQVFPDATHRKAMYSNFSKDEFEEYWSQMIKATGMEGNPWVLKTYNNRSMWATAYLRDQFFGRLRTTSQCEAVNAIIKTYVRKKGCIFEFMHNYDEALSGYRNNELAGELIVKDKTEVGATKIYKLTKYCRDDYERNVVYNGSTLECSCKLFDSRGIPCSHVFYVMKEEHVDHIPSNLVLSRWTKDAKIDYLNTVNCKDNVDSSMVEQARFASYCSVLTDFSKEASKKDGVYGQIMEDLMKLKIKYCSKDDPAIGTQKSVVGDPLLAKNKGAPKKPKKNETKTARRRSNCKNKTDDGRRCSGTQQTKEQSGEANVHLDSMSISDSVSLIAEKKKRKASGNGETSVQNNRSCGANVATTPPIDLTTTSRNFNPIYGLQPVMPMLNPMIQPMHLPPIYPMYGLQHGMSAGQNSNSHYGLLQQVMETARND 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05486 698 Pfam FAR1 DNA-binding domain 83 174 IPR004330 -
Trre8g05486 698 MobiDBLite consensus disorder prediction 600 632 - -
Trre8g05486 698 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 69 498 IPR031052 GO:0006355
Trre8g05486 698 SMART 26again6 415 442 IPR006564 GO:0008270
Trre8g05486 698 MobiDBLite consensus disorder prediction 543 572 - -
Trre8g05486 698 Pfam SWIM zinc finger 411 432 IPR007527 GO:0008270
Trre8g05486 698 MobiDBLite consensus disorder prediction 573 588 - -
Trre8g05486 698 MobiDBLite consensus disorder prediction 34 55 - -
Trre8g05486 698 MobiDBLite consensus disorder prediction 1 55 - -
Trre8g05486 698 MobiDBLite consensus disorder prediction 534 588 - -
Trre8g05486 698 MobiDBLite consensus disorder prediction 610 632 - -
Trre8g05486 698 ProSiteProfiles Zinc finger SWIM-type profile. 404 440 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05486 Trre-Chr8 56595050 56597830 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre8g05486 FAR1 2.1e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05486 - - tpra:123922786 548.125