Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05484 ATGGCTGACGTAGTTGCTGAAATCCCCACTAAGAAATCAAGAGGAACCAGAAAGGCTCTCAAGGAGAAAAAAACCTCATCAATCAATGATGTCAACATTGTAGCGAATGAATCAACAATTTCGCCTCTTTCTGAGAATCTTTCTCAGCCTACGAAGGGAAAAGCTGCATCAAAGAAACAACAACAGCAGCCAAAGCAACAATCTTTCGAGCAAGATTTGCTCGAGATGCAGGAAAAGATGGAGCAATTACGTCTCGAGAAGGAGAAGACTGAAGAATTGTTGAAAGCCAAAGATGAGATCTTGAAGCAAAAAGATGAAGAACTCGAAAATCGGGGGAAGGAGCAAGAGAAACTTCAAGTTGAGCTTAAGAAATTGCAGAAGTTGAAGGAATTCAAACCCACCATGAATTTGCCTATGGTGAAAGACAAGGAAGAAAAGAAAGACAAGAAGAAGAATGCATGCCCTGAGAAAAAGAGGCCTACACCAGCCTACATGTTATGGGTCAAGGATCAATGGCATGAGGTTAAGAAGGAGAATCCAGAGGCAGAATTTAAGGACATTTCAAACATGCTTGGTGCTAAATGGAAGACAGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGAGAAATACCAAGCTGAAAAAGAAGCTTATTTGCAAGTAATTACAAAGGAAAAACGTGAGATTGAGGCAATGAAACTATTGGAAGAAGAGCAGAAGCAGAAGACTGCTATGGAGTTGCTTGAACAGTACATGCAATTCAAACAAGAGACAGAAAAAGAGAACAAGAAAAACAAGAAAGAAAAGGATCCATTGAAACCGAAACATCCTATGTCAGCTTATTTCTTGTTTACTAATGATAGGAGAGCAGCCATTCTTGCAGACAACAAGGGTATCATGGAGGTTTCCAAGATCACCTCTGAAGAGTGGAAAAACATGACTGAAAAACAAAAGAGGCCCTATGAAGAGATGGCAAAGAAGAACAAAGAGAAATATGCTGAAGAAATGGAAGCTTACAAACAGAAAAAAGAAGAGGAGGCTGCAAATCTGATGAAGGAAGAGGAAGAACATATGAAACTTCAGAAACATGAAGCCTTGCAATTGCTCAAGAAGAAAGAAAAAACTGAAAACATGATCAAGGAAACAAAATTGAATCGTCAGAAGAAGAAACAACATAACAAGGAAGATAAGAATTCTGATCCAAACAGGCCTAAAAGACCTCCATCCTCATATATTCTATTCAGCAAAGAAGCAAGGAAGAACATATTGGAGGAACGTCCAGGGATTGGTGCAAACATGGTGACTACACTTGTTTCATTGAAGTGGAAAGATATGAGTGAGGAAGATAAACAAGTGTGGAATGGAAAAGCATCTGAAGCAATGGATGCATACAAGAAGGAAATGGAGGAATACAACAAATCAATTGTTGCAAAGCTGAAGCAGAAAACAGATGAAGAATAA 1458 0.3903 MADVVAEIPTKKSRGTRKALKEKKTSSINDVNIVANESTISPLSENLSQPTKGKAASKKQQQQPKQQSFEQDLLEMQEKMEQLRLEKEKTEELLKAKDEILKQKDEELENRGKEQEKLQVELKKLQKLKEFKPTMNLPMVKDKEEKKDKKKNACPEKKRPTPAYMLWVKDQWHEVKKENPEAEFKDISNMLGAKWKTVSAEEKKPYEEKYQAEKEAYLQVITKEKREIEAMKLLEEEQKQKTAMELLEQYMQFKQETEKENKKNKKEKDPLKPKHPMSAYFLFTNDRRAAILADNKGIMEVSKITSEEWKNMTEKQKRPYEEMAKKNKEKYAEEMEAYKQKKEEEAANLMKEEEEHMKLQKHEALQLLKKKEKTENMIKETKLNRQKKKQHNKEDKNSDPNRPKRPPSSYILFSKEARKNILEERPGIGANMVTTLVSLKWKDMSEEDKQVWNGKASEAMDAYKKEMEEYNKSIVAKLKQKTDEE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05484 485 MobiDBLite consensus disorder prediction 1 74 - -
Trre8g05484 485 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 273 339 IPR009071 -
Trre8g05484 485 Pfam HMG (high mobility group) box 158 219 IPR009071 -
Trre8g05484 485 Pfam HMG (high mobility group) box 273 339 IPR009071 -
Trre8g05484 485 Pfam HMG (high mobility group) box 403 471 IPR009071 -
Trre8g05484 485 MobiDBLite consensus disorder prediction 253 274 - -
Trre8g05484 485 SMART hmgende2 402 472 IPR009071 -
Trre8g05484 485 SMART hmgende2 156 226 IPR009071 -
Trre8g05484 485 SMART hmgende2 272 340 IPR009071 -
Trre8g05484 485 Coils Coil 321 362 - -
Trre8g05484 485 SUPERFAMILY HMG-box 145 219 IPR036910 -
Trre8g05484 485 MobiDBLite consensus disorder prediction 134 158 - -
Trre8g05484 485 Coils Coil 364 391 - -
Trre8g05484 485 MobiDBLite consensus disorder prediction 26 71 - -
Trre8g05484 485 SUPERFAMILY HMG-box 398 473 IPR036910 -
Trre8g05484 485 MobiDBLite consensus disorder prediction 134 157 - -
Trre8g05484 485 MobiDBLite consensus disorder prediction 10 25 - -
Trre8g05484 485 MobiDBLite consensus disorder prediction 253 276 - -
Trre8g05484 485 Gene3D High mobility group box domain 255 352 IPR036910 -
Trre8g05484 485 Gene3D High mobility group box domain 384 483 IPR036910 -
Trre8g05484 485 Coils Coil 221 267 - -
Trre8g05484 485 Coils Coil 453 480 - -
Trre8g05484 485 CDD HMG-box_AtHMGB6-like_rpt1 158 225 - -
Trre8g05484 485 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 480 IPR044601 GO:0003677
Trre8g05484 485 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 403 471 IPR009071 -
Trre8g05484 485 MobiDBLite consensus disorder prediction 367 402 - -
Trre8g05484 485 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 157 225 IPR009071 -
Trre8g05484 485 MobiDBLite consensus disorder prediction 367 411 - -
Trre8g05484 485 Gene3D High mobility group box domain 153 233 IPR036910 -
Trre8g05484 485 SUPERFAMILY HMG-box 260 346 IPR036910 -
Trre8g05484 485 Coils Coil 66 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05484 Trre-Chr8 56565581 56567809 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre8g05484 HMG_box 5.1e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05484 K09273 - gmx:100783033 575.859