Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05482 ATGCAGGTTAATAAAAAATTTATCAAAAAAAAGAAATACCTAGCACACAGTTTACCAGAAAAATTCAAGATGCAAATCTTTGTCAAGACACTCACCGGCAAGACCATTACTCTCGAAGTTGAGAGTTCGGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAAGAAGGGATCCCACCGGACCAGCAGCGTCTTATTTTTGCTGGAAAGCAGCTGGAGGACGGGCGTACCCTTGCTGATTACAACATCCAAAAGGAGTCTACCCTCCATTTGGTGCTCCGACTCCGTGGTGGTATGCAAATCTTTGTGAAGACTCTCACTGGTAAGACAATCACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTCAAGACCAAGATTCAGGACAAAGAAGGTATTCCACCGGACCAACAAAGGTTGATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTATAACATTCAGAAAGAGTCCACTCTTCACCTTGTCCTTCGTCTGAGGGGTGGAATGCAAATCTTTGTGAAGACGCTGACTGGAAAGACTATTACCTTGGAGGTAGAAAGTTCAGACACAATTGATAATGTGAAGGCAAAAATACAGGATAAGGAAGGAATCCCACCTGATCAGCAGAGGTTGATTTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCCGACTACAATATTCAGAAGGAGTCTACTCTTCATCTTGTTTTGCGCCTCCGTGGTGGATTTTAA 759 0.4374 MQVNKKFIKKKKYLAHSLPEKFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05482 252 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Trre8g05482 252 FunFam Polyubiquitin 3 176 251 - -
Trre8g05482 252 CDD Ubl_ubiquitin 176 251 - -
Trre8g05482 252 ProSitePatterns Ubiquitin domain signature. 126 151 IPR019954 -
Trre8g05482 252 ProSiteProfiles Ubiquitin domain profile. 100 175 IPR000626 GO:0005515
Trre8g05482 252 ProSiteProfiles Ubiquitin domain profile. 176 251 IPR000626 GO:0005515
Trre8g05482 252 Gene3D - 16 99 - -
Trre8g05482 252 Gene3D - 100 175 - -
Trre8g05482 252 Gene3D - 176 252 - -
Trre8g05482 252 ProSitePatterns Ubiquitin domain signature. 202 227 IPR019954 -
Trre8g05482 252 FunFam Polyubiquitin 3 100 175 - -
Trre8g05482 252 CDD Ubl_ubiquitin 24 99 - -
Trre8g05482 252 SMART ubq_7 24 95 IPR000626 GO:0005515
Trre8g05482 252 SMART ubq_7 100 171 IPR000626 GO:0005515
Trre8g05482 252 SMART ubq_7 176 247 IPR000626 GO:0005515
Trre8g05482 252 CDD Ubl_ubiquitin 100 175 - -
Trre8g05482 252 Pfam Ubiquitin family 178 249 IPR000626 GO:0005515
Trre8g05482 252 Pfam Ubiquitin family 26 97 IPR000626 GO:0005515
Trre8g05482 252 Pfam Ubiquitin family 102 173 IPR000626 GO:0005515
Trre8g05482 252 FunFam Polyubiquitin 3 24 99 - -
Trre8g05482 252 PANTHER UBIQUITIN 24 101 - -
Trre8g05482 252 SUPERFAMILY Ubiquitin-like 11 99 IPR029071 -
Trre8g05482 252 SUPERFAMILY Ubiquitin-like 175 251 IPR029071 -
Trre8g05482 252 SUPERFAMILY Ubiquitin-like 99 175 IPR029071 -
Trre8g05482 252 ProSitePatterns Ubiquitin domain signature. 50 75 IPR019954 -
Trre8g05482 252 PRINTS Ubiquitin signature 34 54 IPR019956 -
Trre8g05482 252 PRINTS Ubiquitin signature 55 75 IPR019956 -
Trre8g05482 252 PRINTS Ubiquitin signature 76 97 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05482 Trre-Chr8 56557464 56558976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05482 176 252 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 3.73e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05482 K08770 - pavi:110774095 450.284