Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05468 ATGTCTACACCTTCCAATATCAAACGCACACATCACTACACACAAACCAAATTAATCAACAACGACTCTATGAACAATCTCTATCCCAAAACTGTACGAATACTTCTCACCGACAATGACGTCACCGACTCTTCTTCCGACGATGAACATCAACCACTCCGCCGTGTCAAAACCTTCCTCAACGAAATCACAATCGAGAAACCAAACAACAACAACAACATTTCCAAGAAAAAAACTAACAGAGTCAAATCTAAAAAATCTCCGGCGAAGTCGACGGTGACTCAACGGCGGCCGGCGATTTACTCCGGGAAGAAATACCGCGGAGTGAGACAGAGACCTTGGGGGAAATGGTCGGCGGAGATACGAGATTCTAAAATGCGTGTGCGGCGGTGGTTGGGAACTTACAATACTGCTGAAGAAGCTGCTATGGAGTATGATAAAGCTGCAATTGAAATTCGTGGCGCAGACGCGCTAACGAATTTTATTCAACCGATAGGGAAGAAGATTATAAACTCCGACGAAGAATGTTTCAGTAAAAATGTCGTTTCTGCTACTTCAGTACTTAATCAGTGTTCAACTTCTACTTCAGAAGGTGGTGAATCTGTAATAGTAAAAGACAATGTTGTTGTTCATGTTCCAAGAAATGATTCAAATGAATGTTGCTCTGTTTCGGGGAATTTGTTTGTAGAAGATGATAATAAGATTAAATTTGAGTCAGTTTTTCCAATTTGTAGTGATAGTATGTTTGATGAGTTTGGAAGAAATTATCATGTATTTGATAATGAGATGGAGTTGGAAAACATGTTTTTAGTCCCTGAAGATGATGATTTTAATGGAAACTTTGTTGATACTTTGAATCAGAGTTTGAATTTGGATTCAAAAGATTGGAACAGAGATTATACTGATTTCCAGGATATAGAGGATTTCTTTGGTTTGGATCCTGTTACTGTTGTTTGA 957 0.3887 MSTPSNIKRTHHYTQTKLINNDSMNNLYPKTVRILLTDNDVTDSSSDDEHQPLRRVKTFLNEITIEKPNNNNNISKKKTNRVKSKKSPAKSTVTQRRPAIYSGKKYRGVRQRPWGKWSAEIRDSKMRVRRWLGTYNTAEEAAMEYDKAAIEIRGADALTNFIQPIGKKIINSDEECFSKNVVSATSVLNQCSTSTSEGGESVIVKDNVVVHVPRNDSNECCSVSGNLFVEDDNKIKFESVFPICSDSMFDEFGRNYHVFDNEMELENMFLVPEDDDFNGNFVDTLNQSLNLDSKDWNRDYTDFQDIEDFFGLDPVTVV 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05468 318 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Trre8g05468 318 SUPERFAMILY DNA-binding domain 105 162 IPR016177 GO:0003677
Trre8g05468 318 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 194 - -
Trre8g05468 318 Gene3D AP2/ERF domain 104 163 IPR036955 GO:0003700|GO:0006355
Trre8g05468 318 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Trre8g05468 318 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Trre8g05468 318 MobiDBLite consensus disorder prediction 67 96 - -
Trre8g05468 318 FunFam Ethylene-responsive transcription factor 2 104 163 - -
Trre8g05468 318 CDD AP2 104 161 IPR001471 GO:0003700|GO:0006355
Trre8g05468 318 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Trre8g05468 318 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05468 Trre-Chr8 56503215 56504171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05468 30 277 AP2-EREBP Transcription Factor Family AT4G27950 37.079 8.34e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g05468 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05468 - - tpra:123917311 503.056