Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05467 ATGAAACTTGTTCATGTTCATACTTTATGTTTTATTATATGCATATTGTGTGTGAGTTTATGGCATGGAAATTGTGAACCTGTTGAAGATAAAGAGGTTTTGCTTGAGTTTATGAACAAGTTTTCACCTTCAAGGACTTTGAATTGGAATGAGAGTTTATCTGTTTGTGATAATTGGACTGGTGTAACTTGCAATGAAGATAGGTCTAGAGTAATAGCGATTCGTTTACCGGGTGTTGGATTTCATGGAAATATTCCACCTAATACTATTAGTAACCTTTCAGCTCTTCAAATTCTGAGTCTTAGATCCAATTTCATAACTGGGTTTTTTCCTTCTGATTTTTCCAATCTAAAAAACTTGTCTTTTCTTTATCTTCAGTTCAATGATTTGTCAGGTCCTTTACCTGATTTTTCAGCTTGGAAGGATCTTACTGTTGTTAATTTGTCAAATAACAAATTCAATGGAACTATTCCTTTTTCACTTTCTAATTTGACTCAGCTTTCTGGTTTGAATCTTGCAAATAATTCTCTTTCTGGTGAAATTCCTGATCTTCATTTCTCGAGATTGCAGCAGCTGAATTTGTCTAACAATGATTTACATGGAACTGTGCCTATGTCTTTAAAGAGGTTTCCTGATTCAGCTTTCATTGGAAATAATATTACTCTTGGAAATTATACTGCTGTTTCGCCTGTGTTTTCGCCGGTTTACGAGCCTTCTTCGAGGTCTGAGAAACGTGGGAGGCTAAGTGAAACGGCACTTCTTGGAATTGTTATTGTTGGTGGTTTTCTTGGGCTTGTAGCATTTGGTTTTTTGATGTTTGTGTGCTGTAGTTCTAGAAAAAAGGGTGAAGATGACGATGATGCATTTGTTGGAATGTCGAATAAGGGTAAAATGTCTCCTGAAAAAGCGGTCTCGAGGAACATGGATGCTAATAATAAACTGACTTTCTTTGAGGGATGTAATTATGCCTTTGATTTGGAGGATTTGTTGAGAGCTTCTGCTGAGGTTTTGGGAAAGGGAACGTTTGGTACTGCTTATAAGGCGATTCTTGAGGACGCAACCGGGGTTGTTGTGAAGAGGTTGAAGGAGGTAGCCTTTGGAAAGAAGGATTTTGAGCAATTCATGGAGATTGTTGGAAGTCTTAAACATGAGAATGTGGTTGAGCTGAAGGCATATTATTATTCCAAAGATGAGAAATTGATGGTATATGATTACTACAACCAAGGGAGTGTCTCTTCTTTGTTGCATGGGAAAAGAGGAGAGGAAAAAGTGCCTTTAGATTGGGATACTCGGTTGAGAATAGCTTTAGGTGCTGCAAGAGGCATCGCTCGCATCCATGTTGAAAATGGTGGTAAACTTGTACATGGAAACATCAAATCCTCAAACATCTTTCTCAATACTAAACAGCATGGATGTGTATCTGATCTTGGTCTAGCAACCATATCAACCTCACTTCCCCTACCAGTCTCACGAGCTGCCGGTTACCGAGCACCTGAAGTTACAGATACAAGGAAAGCAGCACAACCTTCAGACGTTTACAGCTTTGGCGTGGTGTTACTAGAGCTTCTAACTGGGAAATCGCCTATCCACAATACTGGCGGCGATGAGATTATCCACTTGGTGAGGTGGGTTCATTCGGTCGTGCGAGAGGAGTGGACGGCCGAAGTGTTTGACTTAGAGTTGATGAGATATCCAAATATAGAAGAAGAGATGGTGGAAATGTTGCAGATAGCAATGTCATGTGTGGTAAGAATGGCTGATCAGAGACCTAAGATGTCAGAAGTTGTGAAGATGATAGAAAATGTAAGACAGATTGATAATACACAAACTCGGTCATCGTCTGAGAACCAAGGAGGAGTTAAATTATCATCTCAACGCGATAACGACAATGATAACTACCCTTCTTCCACTTCTTCCCCCGTACCAAAAGGAAGTGATTGA 1941 0.3946 MKLVHVHTLCFIICILCVSLWHGNCEPVEDKEVLLEFMNKFSPSRTLNWNESLSVCDNWTGVTCNEDRSRVIAIRLPGVGFHGNIPPNTISNLSALQILSLRSNFITGFFPSDFSNLKNLSFLYLQFNDLSGPLPDFSAWKDLTVVNLSNNKFNGTIPFSLSNLTQLSGLNLANNSLSGEIPDLHFSRLQQLNLSNNDLHGTVPMSLKRFPDSAFIGNNITLGNYTAVSPVFSPVYEPSSRSEKRGRLSETALLGIVIVGGFLGLVAFGFLMFVCCSSRKKGEDDDDAFVGMSNKGKMSPEKAVSRNMDANNKLTFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATGVVVKRLKEVAFGKKDFEQFMEIVGSLKHENVVELKAYYYSKDEKLMVYDYYNQGSVSSLLHGKRGEEKVPLDWDTRLRIALGAARGIARIHVENGGKLVHGNIKSSNIFLNTKQHGCVSDLGLATISTSLPLPVSRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHNTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMADQRPKMSEVVKMIENVRQIDNTQTRSSSENQGGVKLSSQRDNDNDNYPSSTSSPVPKGSD 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05467 646 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
Trre8g05467 646 ProSiteProfiles Protein kinase domain profile. 331 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05467 646 Pfam Leucine rich repeat 84 130 IPR001611 GO:0005515
Trre8g05467 646 PANTHER OS05G0588300 PROTEIN 11 613 - -
Trre8g05467 646 Gene3D Phosphorylase Kinase; domain 1 297 405 - -
Trre8g05467 646 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Trre8g05467 646 Gene3D Ribonuclease Inhibitor 140 228 IPR032675 -
Trre8g05467 646 FunFam pollen receptor-like kinase 1 300 405 - -
Trre8g05467 646 SUPERFAMILY Protein kinase-like (PK-like) 335 600 IPR011009 -
Trre8g05467 646 Pfam Protein kinase domain 334 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05467 646 MobiDBLite consensus disorder prediction 606 646 - -
Trre8g05467 646 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Trre8g05467 646 SUPERFAMILY L domain-like 30 209 - -
Trre8g05467 646 FunFam Probable inactive receptor kinase RLK902 27 185 - -
Trre8g05467 646 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 406 613 - -
Trre8g05467 646 Gene3D Transferase(Phosphotransferase) domain 1 407 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05467 Trre-Chr8 56494241 56496919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05467 20 640 Receptor kinase-like Gene Family AT4G23740 64.771 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre8g05467 Pkinase 4.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05467 - - gmx:100804799 967.222