Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05449 ATGGAACAGAAAAGCTTTCTGATATCAGCGCTTAGTGTTGGTGTTGGAGTTGGAGTTGGAATTGGATTAGCTTCTGGACAATCTGTTTCTAAATGGGGAGGATTTACTTATTCTTCTTCATCTTCAAATTCTCTTATTACTGCTGATCAAATTCAGCATGAAATGCTCCGTTTAATTGTTGATGGCAGAGATAGCAACGTTACTTTCGACAAATTCCCTTATTACCTAAGTGAGCAAACACGGGTTTTGTTGACAAGTGCTGCTTATGTTCATTTAAAGCATGCTGAAGTTTCTAAATATACGCGTAATCTTGCTCCTGCTAGCAGAACTATTCTTTTATCAGGGCCTGCTGAACTCTACCAACAAGTGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTGCTTCTCTTGGATTTAACCGACTTTTCATTGAAGGTTCAAAGTAAATATTGTTCTGGCAACAAAGAATATTCTTTCAAAAGATCCACTTCAGAGTCAACTTTGGAGAAGCTATCTGATCTATTTGGGTCATTTTCAATCTTTCAACAAAGAGAGGAACCTAAAGTTGCAGGAAAATTGCACAGGCAAAGCAGTGGAATGGACCTACAATCAATGGGTAATGAAGGATCTTGTAATCCTTCAAAGCTCCGTAGAAACGCTTCTTCTTCTTCAAATATTAGTGGCCTTACTTCGCAAAGCAATCCTACAAATTCAGCTCCTTTGAAGCGCACAGCCAGCTGGTCTTTTGATGAAAAACTACTTATACACTCTCTTTACAAGGTTCTACTTTCTGTGTCTAAAACCTATCCTATTGTGCTATATCTGAGGGATGTTGATAGGTTATTATCTAGATCACAGAAGATATATAACATGTTCCAAAACATGTTGAAGAAACTCTCTGGACCAATTCTGATTCTTGGTTCGCGAGTTATAGATTCTAGTAATGAATTTGAAGATCCGGATGAGAAACTTACTTTGCTCTTCCCGTACGATATAGAAATCAGACCTCCAGAAGATGAATCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTCAGGATAACAAGAATCATATCACGGAAGTGCTTGCGGCCAATGATCTTGATTGCGATGACTTGGATTCCATCTGTGTGGAAGACACAATGGTTCTCAGTAACTATATAGAAGAGATTATTGTGTCAGCAATCTCTCATCATTTGATGAAAAACAAAGACCTTGAATATAGAAATGGAAAGCTAATTATTTCTTGCAATAGTTTATCGCATGCACTGGGTATATTCCGAAAGGGGAAATTCAGTGGAAGTGATACATCAAAATTGGAAGATCAAGCTCCAAAATCTGAGATTTCAAGTGTGGTAGAAACTGTTGCTAAACCAGCAGCGAAGGCTGAAAGTGCTGCTGCTTCGGAAAAAAAGGCTGAAGCAGAAATATCAACTTCAGTGGCAAAGACAAGTGTTGAAAAATCAGTTCCACCATCTAAAGCTCCTGAAGTTGCTCCTGATAACGAATTTGAGAAGCGAATAAGGCCTGAAGTTATACCAGCAAAAGAGATTGATGTCACATTCGCTGATATTGGTGCCTTAGAAGAGACAAAAGAATCCCTTCAAGAACTAGTAATGCTTCCTCTCCGAAGGCCAGACCTTTTCACCGGAGGACTTCTAAAGCCATGCAGAGGAATATTGCTATTTGGACCTCCTGGAACTGGGAAGACAATGTTGGCAAAGGCCATTGCAAAAGAAGCTGGAGCAAGTTTCATTAATGTGTCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTTTATTCACCCTTGCAGCCAAAGTCTCTCCAACTATTATATTTGTCGATGAGGTTGATAGCATGCTTGGGCAACGAACAAGAGTTGGGGAGCATGAAGCCATGCGGAAAATAAAGAATGAATTTATGTCTCATTGGGATGGGCTCACGACAAAACAAGGAGAGCGCATCCTTGTTCTTGCAGCAACCAATAGGCCATTTGACCTGGATGAAGCTATTATAAGGCGATTCGAGAGGAGAATTATGGTAGGACTACCATCTGTTGAGAACAGGGGAAAGATTTTAAGGACACTTTTGGGAAAAGAAAAGGTGGACAAGGAAATTGATTTTAAGGAACTAGCCACCATGACAGAAGGATATACCGGAAGTGATCTAAAGAACTTTTGCACGACTGCTGCTTATCGACCTGTTCGAGAGTTGATTCAGCAAGAGAGATTAAAGGATCTGGATAAGAAACAGAAAGCTACTAAGGAACAAAGCAAAAATACCGAAGAAGAACCGAAAGAGGAAGTTCAACAAGAAAGAGTTATTACCTTGAGGCCATTGAATATGCAGGATTTCAAAGAGGCTAAGAAACAAGTTGCTGCAAGCTTTTCTGCTGAGGGTGCTGGAATGGGTGAGTTGACTCAGTGGAATGAGTTGTATGGAGAAGGGGGTTCTAGGAAGCAAAAGCAGTTGTCATATTTCCTGTGA 2538 0.4011 MEQKSFLISALSVGVGVGVGIGLASGQSVSKWGGFTYSSSSSNSLITADQIQHEMLRLIVDGRDSNVTFDKFPYYLSEQTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLLDLTDFSLKVQSKYCSGNKEYSFKRSTSESTLEKLSDLFGSFSIFQQREEPKVAGKLHRQSSGMDLQSMGNEGSCNPSKLRRNASSSSNISGLTSQSNPTNSAPLKRTASWSFDEKLLIHSLYKVLLSVSKTYPIVLYLRDVDRLLSRSQKIYNMFQNMLKKLSGPILILGSRVIDSSNEFEDPDEKLTLLFPYDIEIRPPEDESHLVSWKSQLEEDMKMIQVQDNKNHITEVLAANDLDCDDLDSICVEDTMVLSNYIEEIIVSAISHHLMKNKDLEYRNGKLIISCNSLSHALGIFRKGKFSGSDTSKLEDQAPKSEISSVVETVAKPAAKAESAAASEKKAEAEISTSVAKTSVEKSVPPSKAPEVAPDNEFEKRIRPEVIPAKEIDVTFADIGALEETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLTTKQGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENRGKILRTLLGKEKVDKEIDFKELATMTEGYTGSDLKNFCTTAAYRPVRELIQQERLKDLDKKQKATKEQSKNTEEEPKEEVQQERVITLRPLNMQDFKEAKKQVAASFSAEGAGMGELTQWNELYGEGGSRKQKQLSYFL 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05449 845 MobiDBLite consensus disorder prediction 199 243 - -
Trre8g05449 845 Coils Coil 761 781 - -
Trre8g05449 845 Pfam ATPase family associated with various cellular activities (AAA) 569 699 IPR003959 GO:0005524|GO:0016887
Trre8g05449 845 MobiDBLite consensus disorder prediction 194 243 - -
Trre8g05449 845 Gene3D - 528 816 IPR027417 -
Trre8g05449 845 SMART AAA_5 565 702 IPR003593 GO:0016887
Trre8g05449 845 MobiDBLite consensus disorder prediction 763 790 - -
Trre8g05449 845 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 528 703 - -
Trre8g05449 845 ProSitePatterns AAA-protein family signature. 672 691 IPR003960 GO:0005524|GO:0016887
Trre8g05449 845 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 51 844 - -
Trre8g05449 845 Gene3D - 701 807 - -
Trre8g05449 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 528 813 IPR027417 -
Trre8g05449 845 Pfam AAA+ lid domain 723 765 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05449 Trre-Chr8 56324434 56329466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05449 516 761 Calmodulin-binding Proteins AT3G56690 37.402 3.16e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05449 - - gmx:100807464 1320.45