Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05448 ATGGAACAGAAAAGCTTTCTGATATCAGCGCTTAGTGTTGGTGTTGGAGTTGGAGTTGGAATTGGATTAGCTTCTGGACAATCTGTTTCTAAATGGGGAGGATTTACTTATTCTTCTTCATCTTCAAATTCTCTTATTACTGCTGATCAAATTCAGCATGAAATGCTCCGTTTAATTGTTGATGGCAGAGATAGCAACGTTACTTTCGACAAATTCCCTTATTACCTAAGTGAGCAAACACGGGTTTTGTTGACAAGTGCTGCTTATGTTCATTTAAAGCATGCTGAAGTTTCTAAATATACGCGTAATCTTGCTCCTGCTAGCAGAACTATTCTTTTATCAGGGCCTGCTGAACTCTACCAACAAGTGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTGCTTCTCTTGGATTTAACCGACTTTTCATTGAAGGTTCAAAGTAAATATTGTTCTGGCAACAAAGAATATTCTTTCAAAAGATCCACTTCAGAGTCAACTTTGGAGAAGCTATCTGATCTATTTGGGTCATTTTCAATCTTTCAACAAAGAGAGGAACCTAAAGGAAAATTGCACAGGCAAAGCAGTGGAATGGACCTACAATCAATGGGTAATGAAGGATCTTGTAATCCTTCAAAGCTCCGTAGAAACGCTTCTTCTTCTTCAAATATTAGTGGCCTTACTTCGCAAAGCAATCCTACAAATTCAGCTCCTTTGAAGCGCACAGCCAGCTGGTCTTTTGATGAAAAACTACTTATACACTCTCTTTACAAGGTTCTACTTTCTGTGTCTAAAACCTATCCTATTGTGCTATATCTGAGGGATGTTGATAGGTTATTATCTAGATCACAGAAGATATATAACATGTTCCAAAACATGTTGAAGAAACTCTCTGGACCAATTCTGATTCTTGGTTCGCGAGTTATAGATTCTAGTAATGAATTTGAAGATCCGGATGAGAAACTTACTTTGCTCTTCCCGTACGATATAGAAATCAGACCTCCAGAAGATGAATCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTCAGGATAACAAGAATCATATCACGGAAGTGCTTGCGGCCAATGATCTTGATTGCGATGACTTGGATTCCATCTGTGTGGAAGACACAATGGTTCTCAGTAACTATATAGAAGAGATTATTGTGTCAGCAATCTCTCATCATTTGATGAAAAACAAAGACCTTGAATATAGAAATGGAAAGCTAATTATTTCTTGCAATAGTTTATCGCATGCACTGGGTATATTCCGAAAGGGGAAATTCAGTGGAAGTGATACATCAAAATTGGAAGATCAAGCTCCAAAATCTGAGATTTCAAGTGTGGTAGAAACTGTTGCTAAACCAGCAGCGAAGGCTGAAAGTGCTGCTGCTTCGGAAAAAAAGGCTGAAGCAGAAATATCAACTTCAGTGGCAAAGACAAGTGTTGAAAAATCAGTTCCACCATCTAAAGCTCCTGAAGTTGCTCCTGATAACGAATTTGAGAAGCGAATAAGGCCTGAAGTTATACCAGCAAAAGAGATTGATGTCACATTCGCTGATATTGGTGCCTTAGAAGAGACAAAAGAATCCCTTCAAGAACTAGTAATGCTTCCTCTCCGAAGGCCAGACCTTTTCACCGGAGGACTTCTAAAGCCATGCAGAGGAATATTGCTATTTGGACCTCCTGGAACTGGGAAGACAATGTTGGCAAAGGCCATTGCAAAAGAAGCTGGAGCAAGTTTCATTAATGTGTCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTTTATTCACCCTTGCAGCCAAAGTCTCTCCAACTATTATATTTGTCGATGAGGTTGATAGCATGCTTGGGCAACGAACAAGAGTTGGGGAGCATGAAGCCATGCGGAAAATAAAGAATGAATTTATGTCTCATTGGGATGGGCTCACGACAAAACAAGGAGAGCGCATCCTTGTTCTTGCAGCAACCAATAGGCCATTTGACCTGGATGAAGCTATTATAAGGCGATTCGAGAGGAGAATTATGGTAGGACTACCATCTGTTGAGAACAGGGGAAAGATTTTAAGGACACTTTTGGGAAAAGAAAAGGTGGACAAGGAAATTGATTTTAAGGAACTAGCCACCATGACAGAAGGATATACCGGAAGTGATCTAAAGAACTTTTGCACGACTGCTGCTTATCGACCTGTTCGAGAGTTGATTCAGCAAGAGAGATTAAAGGATCTGGATAAGAAACAGAAAGCTACTAAGGAACAAAGCAAAAATACCGAAGAAGAACCGAAAGAGGAAGTTCAACAAGAAAGAGTTATTACCTTGAGGCCATTGAATATGCAGGATTTCAAAGAGGCTAAGAAACAAGTTGCTGCAAGCTTTTCTGCTGAGGGTGCTGGAATGGGTGAGTTGACTCAGTGGAATGAGTTGTATGGAGAAGGGGGTTCTAGGAAGCAAAAGCAGTTGTCATATTTCCTGTGA 2532 0.4009 MEQKSFLISALSVGVGVGVGIGLASGQSVSKWGGFTYSSSSSNSLITADQIQHEMLRLIVDGRDSNVTFDKFPYYLSEQTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLLDLTDFSLKVQSKYCSGNKEYSFKRSTSESTLEKLSDLFGSFSIFQQREEPKGKLHRQSSGMDLQSMGNEGSCNPSKLRRNASSSSNISGLTSQSNPTNSAPLKRTASWSFDEKLLIHSLYKVLLSVSKTYPIVLYLRDVDRLLSRSQKIYNMFQNMLKKLSGPILILGSRVIDSSNEFEDPDEKLTLLFPYDIEIRPPEDESHLVSWKSQLEEDMKMIQVQDNKNHITEVLAANDLDCDDLDSICVEDTMVLSNYIEEIIVSAISHHLMKNKDLEYRNGKLIISCNSLSHALGIFRKGKFSGSDTSKLEDQAPKSEISSVVETVAKPAAKAESAAASEKKAEAEISTSVAKTSVEKSVPPSKAPEVAPDNEFEKRIRPEVIPAKEIDVTFADIGALEETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLTTKQGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENRGKILRTLLGKEKVDKEIDFKELATMTEGYTGSDLKNFCTTAAYRPVRELIQQERLKDLDKKQKATKEQSKNTEEEPKEEVQQERVITLRPLNMQDFKEAKKQVAASFSAEGAGMGELTQWNELYGEGGSRKQKQLSYFL 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05448 843 Pfam AAA+ lid domain 721 763 IPR041569 -
Trre8g05448 843 MobiDBLite consensus disorder prediction 187 241 - -
Trre8g05448 843 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 526 701 - -
Trre8g05448 843 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 51 842 - -
Trre8g05448 843 Gene3D - 526 814 IPR027417 -
Trre8g05448 843 MobiDBLite consensus disorder prediction 197 241 - -
Trre8g05448 843 Pfam ATPase family associated with various cellular activities (AAA) 567 697 IPR003959 GO:0005524|GO:0016887
Trre8g05448 843 ProSitePatterns AAA-protein family signature. 670 689 IPR003960 GO:0005524|GO:0016887
Trre8g05448 843 Coils Coil 759 779 - -
Trre8g05448 843 SMART AAA_5 563 700 IPR003593 GO:0016887
Trre8g05448 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 526 811 IPR027417 -
Trre8g05448 843 Gene3D - 699 805 - -
Trre8g05448 843 MobiDBLite consensus disorder prediction 761 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05448 Trre-Chr8 56324434 56329466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05448 514 759 Calmodulin-binding Proteins AT3G56690 37.402 3.15e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05448 - - gmx:100807464 1325.46