Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05439 ATGGACGAAACTGTTCTTGACGATATCATTCGGAAGCTTGTATCGGCGAAGAACGGTAGAACGACGAAGCAAGTTCATCTTACGGAGGCTGATATTCGTCAGCTTTGTTCTTCTGCTAAAGAGATCTTTCTTAGTCAACCTAATCTTCTTGAACTTGAAGCTCCTATCAAAATTTGTGGAGATGTCCATGGCCAGTTTTCTGACCTTTTAAGGCTGTTTGAGTACGGAGGATTCCCACCCGAATCAAATTATTTGTTTCTTGGAGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCTTACTCCTTGCATACAAAATCAAATACAAGGAGAACTTCTTTCTTCTCAGGGGCAATCATGAATGCGCTTCCATCAATCGCATATATGGTTTCTATGATGAGTGCAAGAGGAGGTTCAATGTTCGCCTCTGGAAGACATTTACTGATTGCTTTAACTGTTTACCGGTGGCTGCTCTAGTAGATGAGAAGATCCTTTGCATGCATGGTGGACTCTCTCCTGAACTTAAAAACTTAGATCAGATACGGAACATTGCTCGCCCTATTGATGTGCCAGATCATGGCCTTCTCTGTGACCTTCTGTGGGCTGATCCTGATAAAGATCTAGAGGGATGGGGAGAAAATGATCGAGGTGTTTCATTCACATTCGGGGCTGATAAGGTTTCTGAGTTTCTTGAGGAGCATGACCTTGATCTGATTTGCAGAGCTCACCAGGTTGTAGAAGATGGATATGAGTTTTTTGCCAAACGTAAGCTGGTGACTGTATTCTCTGCACCAAATTACTGTGGTGAATTTGATAACGCTGGTGCTATGATGAGTGTAGATGACACATTGACATGCTCTTTCCAGATACTTAAGGCTTCTGATAAGAAGGGGAAAGTTGGATTTGGCAATAACTCATCAAGACCTGGAACTCCACCTCATAAGGTAAAAAAATAA 963 0.4206 MDETVLDDIIRKLVSAKNGRTTKQVHLTEADIRQLCSSAKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGFPPESNYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPELKNLDQIRNIARPIDVPDHGLLCDLLWADPDKDLEGWGENDRGVSFTFGADKVSEFLEEHDLDLICRAHQVVEDGYEFFAKRKLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASDKKGKVGFGNNSSRPGTPPHKVKK 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05439 320 MobiDBLite consensus disorder prediction 301 320 - -
Trre8g05439 320 SMART pp2a_7 27 297 IPR006186 GO:0016787
Trre8g05439 320 Gene3D - 1 306 IPR029052 -
Trre8g05439 320 Pfam Serine-threonine protein phosphatase N-terminal domain 6 53 IPR031675 -
Trre8g05439 320 CDD MPP_PP1_PPKL 5 294 - -
Trre8g05439 320 SUPERFAMILY Metallo-dependent phosphatases 22 298 IPR029052 -
Trre8g05439 320 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Trre8g05439 320 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Trre8g05439 320 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Trre8g05439 320 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Trre8g05439 320 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Trre8g05439 320 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Trre8g05439 320 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Trre8g05439 320 FunFam Serine/threonine-protein phosphatase 1 303 - -
Trre8g05439 320 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 11 299 - -
Trre8g05439 320 Pfam Calcineurin-like phosphoesterase 55 247 IPR004843 GO:0016787
Trre8g05439 320 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05439 Trre-Chr8 56242634 56245109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05439 56 240 Calmodulin-binding Proteins AT5G63870 30.000 4.73e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05439 K06269 - cit:102611078 624.78