Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05427 ATGGGGACTAAGGAGGATAGCACAACTAAACCTTCTAAAACATCTTCATCAACTCAGGAGGTACCAACAGTACCACCACCATATCCAGATTGGTCTCAGGCCTACTATAATCCTGGAGCCGCTCCGCCTCCCTATTATGCCTCAACTGTTGGTCCGCCAACCCCCCATCCGTATATGTGGGGAAGCCAGCATCCTTTAATGGCGCCATATGGGACTCCAGTCCCGTATCCTGCTATGTACCCTCCTGGAAATATATATGCTCATCCTAGCATGGTAGTGACTCCAAGTGCTATGCACCAAACTACAGAATTTGAAGGGAAGGGACCTGATGGAAAGGATAAGGATAAGGATTCATCTAAAAAACCGAAGGGCACTTCTGCGAATACATGTGCCAAAGCAGGAGAGAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCTTTTCACAAAGTGGTGAAAGTGGTTCAGAGGGTTCATCAAATGGTAGTGATGAGAACCAACAGGAATCAGCGAGAAACAAGAAGGGAGGTTTTGACCTCATGCTTGTTAATGGAACGAACGTACAGAACAATAACACTGGACCCATTTCTCAATCGCCTGTTCCCGAAAATCCTGTTGTCTCAATGCCTGCTACTAATCTTAATATCGGAATGGATTTATGGAATGCATCTCCTGCTGGTGCTGAAGCCGCCAAAATGAGACACAATCAATCTAGTGCCCCTGGAGCTGGTGAACAATGGATGCAACAAGATGATCGTGAGCTGAAAAGACAGAAGAGAAAACAGTCTAATCGAGAGTCAGCTAGGAGGTCAAGACTACGCAAGCAGGCTGAGTGTGAAGAGCTACAAAAGAGGGTTGAGGCGTTGGGAGGTGAGAATCGAACTCTCAGAGAAGAGCTTCAGAAACTTTCTGAGGAATGCGAGAAGCTTACATCTGAAAACAATTCTATCAAGGAAGAGTTGGAACGATTGTGTGGGCCGGAAGTAGTTGCTAACCTTGAATGA 1005 0.4647 MGTKEDSTTKPSKTSSSTQEVPTVPPPYPDWSQAYYNPGAAPPPYYASTVGPPTPHPYMWGSQHPLMAPYGTPVPYPAMYPPGNIYAHPSMVVTPSAMHQTTEFEGKGPDGKDKDKDSSKKPKGTSANTCAKAGESGKAGSGSGNDGFSQSGESGSEGSSNGSDENQQESARNKKGGFDLMLVNGTNVQNNNTGPISQSPVPENPVVSMPATNLNIGMDLWNASPAGAEAAKMRHNQSSAPGAGEQWMQQDDRELKRQKRKQSNRESARRSRLRKQAECEELQKRVEALGGENRTLREELQKLSEECEKLTSENNSIKEELERLCGPEVVANLE 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05427 334 CDD bZIP_plant_GBF1 257 307 IPR045314 GO:0003700|GO:0006355
Trre8g05427 334 Pfam Disordered region downstream of MFMR 116 224 - -
Trre8g05427 334 SUPERFAMILY Leucine zipper domain 255 311 IPR046347 GO:0003700|GO:0006355
Trre8g05427 334 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 254 317 IPR004827 GO:0003700|GO:0006355
Trre8g05427 334 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 259 274 IPR004827 GO:0003700|GO:0006355
Trre8g05427 334 Pfam G-box binding protein MFMR 1 91 IPR012900 -
Trre8g05427 334 Pfam bZIP transcription factor 253 314 IPR004827 GO:0003700|GO:0006355
Trre8g05427 334 MobiDBLite consensus disorder prediction 1 21 - -
Trre8g05427 334 MobiDBLite consensus disorder prediction 227 277 - -
Trre8g05427 334 Coils Coil 265 320 - -
Trre8g05427 334 Gene3D - 255 309 - -
Trre8g05427 334 MobiDBLite consensus disorder prediction 142 167 - -
Trre8g05427 334 MobiDBLite consensus disorder prediction 183 206 - -
Trre8g05427 334 SMART brlzneu 252 316 IPR004827 GO:0003700|GO:0006355
Trre8g05427 334 MobiDBLite consensus disorder prediction 105 122 - -
Trre8g05427 334 MobiDBLite consensus disorder prediction 1 30 - -
Trre8g05427 334 FunFam BZIP transcription factor 254 305 - -
Trre8g05427 334 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 329 IPR044827 GO:0003700|GO:0006355|GO:0043565
Trre8g05427 334 MobiDBLite consensus disorder prediction 99 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05427 Trre-Chr8 56145016 56152290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05427 1 334 bZIP Transcription Factor Family AT4G36730 52.367 2.08e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre8g05427 MFMR_assoc 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05427 K09060 - gmx:778191 474.937