Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05425 ATGATCATATCAGAGAAGAACCGCAAAGAGATCTGCAAATACCTCTTTCAAGAGGGTGTATGTTATGCTAAGAAAGATTACAATTTGGCAAAGCACCCAGAAATCGATGTTCCTAATTTGCAGGTGATTAAGCTTATGCAGAGCTTCAAATCCAGGGAATATGTTAGGGAAACATTTGCTTGGATGCACTATTATTGGTTTCTTACAAATGATGGAATTGAGTTTCTCAGAACTTATCTTAATCTTCCTTCTGAGATTGTCCCTGCTACTTTGAAGAAACAGGCTAAGCCACCTGGTAGACCATTTGGTGGTCCACCCGGTGATCGTCCTAGGGGTCCACCAAGGTTTGAAGGGGAACGTAGATTTGGTGGTGACCGTGATGGGTACCGTGGAGGTCCTCGTGGACCTGGTGGTGAATTTGGAGGAGAAAAGGGAGGTGCTCCTGCTGATTACAGACCCTCTTTTGGGGGTCCTGGTGGAAGGCCTGGCTTTGGTCGTGGGTCTGGTGGTTTTGGGGCTGGGGCTCCAACCAGCTCAGATGCTTAA 546 0.4689 MIISEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPPGDRPRGPPRFEGERRFGGDRDGYRGGPRGPGGEFGGEKGGAPADYRPSFGGPGGRPGFGRGSGGFGAGAPTSSDA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05425 181 MobiDBLite consensus disorder prediction 112 128 - -
Trre8g05425 181 MobiDBLite consensus disorder prediction 91 181 - -
Trre8g05425 181 PANTHER 40S RIBOSOMAL PROTEIN S10 1 179 IPR037447 -
Trre8g05425 181 FunFam 40S ribosomal protein S10 1 104 - -
Trre8g05425 181 Pfam Plectin/S10 domain 3 94 IPR005326 -
Trre8g05425 181 Gene3D - 1 104 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05425 Trre-Chr8 56128446 56130037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05425 1 155 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 82.581 1.89e-75 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05425 K02947 - ini:109176255 214.542