Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05424 ATGGCAACAAAAGAGTCAAGTTCTTCTGCTTCAGCTGCAGGGGACACTAAAATCAAAAGGGTTCTTACTCATGGTGGTAAATATGCACACTACAATGTGTATGGAAACTTGTTTGAGGTTTCTTCTAAGTATGTGCCTCCCATTCGCCCTATCGGAAGAGGTGCTTATGGTATCGTTTGTGCTGCTGTTAATTTTGATACGCACGAACAAGTTGCTATTAAGAAGATCGGTAACGCATTTGACAATATAATCGATGCTAAAAGGACTTTGAGAGAAATCAAGCTCCTTCGTCACATGGATCATCAAAATATCATTGCCATCAAGGATATCATACGACCCCCGAAAAAGGAGGCATTTAATGATGTATACATTGTTTATGAATTAATGGACACTGATCTCCATCATATAATTCATTCTGACCAACCTCTTTGTGAAGAACATTGTCAGTACTTCTTATATCAGCTGTTACGTGGGCTGAAATATGTGCACTCAGCTAATGTTTTGCATCGCGATCTTAAGCCAAGTAATTTACTAGTGAATGCAAACTGCGACCTTAAAATCGGTGACTTTGGTTTGGCAAGGACAACATCTGAAACCGATTTCATGACTGAGTATGTTGTCACGAGATGGTACCGGGCCCCCGAATTGCTCCTCAATTGTTCTGAGTACACCTCTGCAATTGATGTTTGGTCTGTTGGTTGCATATTTGGTGAAATTATGACCAGAGAGCCCTTGTTTCCTGGCAAAGACTATGTTCATCAATTAAGGCTTATCACAGAGTTAATAGGTTCACCTGATGATGCCAGTCTTGGATTTCTCCGAAGTGACAATGCTAGAAGATATTTTAGACAGTTTCAACAATACCGGAAACAAAAATTCTCGTCCAGATTCCCAAACATGTTGCCTGAAGCACTTGATCTGTTAGAAAAAATGCTTATCTTTGATCCAAACAAACGCATCACAGTTGATGAGGCGCTGTGTCACCCCTATCTTTCATCACTTCACAACACCAATGAGGAGCCGGTCTGTCCTAGGCCATTCACTTTTGACTTTGATCAACCAACATGCACTGAAGAGAATATCAAGGAGCTTATCTGGAAAGAATCTGTGAAGTTCAATCCAGATCCACCTTGTCAGTAA 1140 0.4061 MATKESSSSASAAGDTKIKRVLTHGGKYAHYNVYGNLFEVSSKYVPPIRPIGRGAYGIVCAAVNFDTHEQVAIKKIGNAFDNIIDAKRTLREIKLLRHMDHQNIIAIKDIIRPPKKEAFNDVYIVYELMDTDLHHIIHSDQPLCEEHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLVNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCIFGEIMTREPLFPGKDYVHQLRLITELIGSPDDASLGFLRSDNARRYFRQFQQYRKQKFSSRFPNMLPEALDLLEKMLIFDPNKRITVDEALCHPYLSSLHNTNEEPVCPRPFTFDFDQPTCTEENIKELIWKESVKFNPDPPCQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05424 379 Gene3D Phosphorylase Kinase; domain 1 28 368 - -
Trre8g05424 379 Gene3D Transferase(Phosphotransferase) domain 1 129 358 - -
Trre8g05424 379 Pfam Protein kinase domain 49 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05424 379 ProSiteProfiles Protein kinase domain profile. 45 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05424 379 FunFam Mitogen-activated protein kinase 129 358 - -
Trre8g05424 379 SUPERFAMILY Protein kinase-like (PK-like) 48 338 IPR011009 -
Trre8g05424 379 ProSitePatterns Protein kinases ATP-binding region signature. 51 75 IPR017441 GO:0005524
Trre8g05424 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Trre8g05424 379 SMART serkin_6 45 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05424 379 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 43 339 - -
Trre8g05424 379 CDD STKc_TEY_MAPK 38 374 - -
Trre8g05424 379 FunFam Mitogen-activated protein kinase 30 140 - -
Trre8g05424 379 ProSitePatterns MAP kinase signature. 80 183 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05424 Trre-Chr8 56123763 56126572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05424 7 374 MAP Kinase Gene Family AT4G01370 80.435 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trre8g05424 Pkinase 1.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05424 - - tpra:123916746 753.821