Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05421 ATGGCTAGACAAGTTTGTCATGAAGATGACAAAACATCAAGTGGTGGATTTTGTTACAATCCATCAATTCAAACACAAATTCAAGGTTTTGTTTCTGATCCAGAGATGTTTAATCTCACAACTGGCATGGAGATGATAGGGTTTTCAAAACATCTTCAACATCAACAACAACATCATCATAGTACTAGTGACACAAACATGTGGAAAACAAATTTCATAGGAAAATTACCAAGTCAACACTCTGCAAGTTCTTCAAAAACTATGAATGACTCAAATTTCTATCATCAAGATTTCACTGAACCAACAAGTAGTGATCATCATCATCATCATCAAAATCTAAACAACATGGTTCATCATCAGTGGCAACAACAACAAGAACAACATGTTGATGATTCAACACTAAGATGTGTTTTTCCATGTGAAGGTAATGAAAGACCAAGTCAAGGACTTTCACTATCTCTTAGTTCAACAAATCCAACATCTATTGGTTTACAATCTTTTGAACTAAGACACACTCCTACTACTACTACTACTACTCAACAAGATCAAGGGTATCATGGTCATTTTCTTCTCAAAAACTCTAAGTTTTTGTTACCAGCTCAACAACTTCTCAATGAGTTTTGTAGTTTAGAAACCACAAAACAAAATGATTTAGTTTTACAAAAACAAAAATCTCAAAAGTTCAACAACAACAAACAAACTTGGGAAGATCAAGATATTAACAATGGTGGTAGTAGCAGTTCCTCAATCAAACAATCTTTAACCTCTTTAGAGTTTGTTGAATTACAAAAGAGAAAAACCAAGCTTCTTTCCATGCTAGAAGAGGTTGATAGAAGGTACAAGAACTATTGTAATCAAATGAAGAGTGTGGTTTCATCATTTGAAGCTGTAGCTGGAAATGGAGCTGCTAAAGTTTATTCAGCTTTAGCTTTAAAAGCTATGTCAAGACATTTTAGATGTTTGAAAGATGGAATATTGGAACAAATTCAAACAACAAGAAAAGCTATGGGAGAAAAAGACCCTATTGCACCTGGAACAACTAAGGGTGAAACTCCTAGGCTTAAAATCCTAGATAGAGTTTTAAGACAACAAAGAGCATTTCAACAAATTAACATGATGGAAACTCATCCTTGGAGACCTCAACGCGGTCTTCCCGAACGTTCTGTTTCTATTCTTCGAGCTTGGCTTTTCGAACACTTTCTACATCCGTACCCAAGCGACGTTGATAAACATATTTTGGCCCGCCAAACCGGTCTCTCAAGAAGCCAGGTATCAAATTGGTTTATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTATTTAGAAGAAGAGAAAGAGCAACAAAGAAACACAACAACTTTGGAGGGAGGAGGAAACAACATTAATCATGAAGAGGAAAATCTTAATAATGTGCTACAAAACCAATCTCCAACACAACCTCATGAAGATCAAAAGCCACGACTCGTTCGAATCGATTCCGAGTGTGTTTCATCCATCATTAACAACAATCGTGATCATAATAAAAATGAGGCTAATAAGAATTTGAATCATCATCATCAATTAGCCGCGGACGCATTTGGATCGGTTGATATCGATTTTTCATCTTATAATACACATCATTCTTCTGATCATATGGTTGCTGCTTACACAAGTAATGAGAGTTTCCACCACGGTGGTGGCGGTGGCGGAGTGTCGTTGACATTAGGGTTACAACAACATGGTGGAAATGGAGTGAGTTTGGCTTTTCCATCAACAAGTCAGGGTCCAATGTTCTATACAAGAGAACAAATTGATGAACCGGTTCAATACTCTCTTTTGGATGGTGAAGGTACAAATATTATGCCGTATAGGAATCTCATGGGGACACAATTGTTACATGACTTGGCATGA 1902 0.3675 MARQVCHEDDKTSSGGFCYNPSIQTQIQGFVSDPEMFNLTTGMEMIGFSKHLQHQQQHHHSTSDTNMWKTNFIGKLPSQHSASSSKTMNDSNFYHQDFTEPTSSDHHHHHQNLNNMVHHQWQQQQEQHVDDSTLRCVFPCEGNERPSQGLSLSLSSTNPTSIGLQSFELRHTPTTTTTTQQDQGYHGHFLLKNSKFLLPAQQLLNEFCSLETTKQNDLVLQKQKSQKFNNNKQTWEDQDINNGGSSSSSIKQSLTSLEFVELQKRKTKLLSMLEEVDRRYKNYCNQMKSVVSSFEAVAGNGAAKVYSALALKAMSRHFRCLKDGILEQIQTTRKAMGEKDPIAPGTTKGETPRLKILDRVLRQQRAFQQINMMETHPWRPQRGLPERSVSILRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEQQRNTTTLEGGGNNINHEEENLNNVLQNQSPTQPHEDQKPRLVRIDSECVSSIINNNRDHNKNEANKNLNHHHQLAADAFGSVDIDFSSYNTHHSSDHMVAAYTSNESFHHGGGGGGVSLTLGLQQHGGNGVSLAFPSTSQGPMFYTREQIDEPVQYSLLDGEGTNIMPYRNLMGTQLLHDLA 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05421 633 CDD homeodomain 378 439 IPR001356 GO:0003677
Trre8g05421 633 MobiDBLite consensus disorder prediction 447 468 - -
Trre8g05421 633 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677|GO:0006355
Trre8g05421 633 SUPERFAMILY Homeodomain-like 379 444 IPR009057 -
Trre8g05421 633 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 104 469 - -
Trre8g05421 633 Pfam Associated with HOX 191 325 IPR006563 -
Trre8g05421 633 Gene3D - 381 443 - -
Trre8g05421 633 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677
Trre8g05421 633 SMART prehox3 185 327 IPR006563 -
Trre8g05421 633 FunFam BEL1-like homeodomain protein 4 381 443 - -
Trre8g05421 633 SMART HOX_1 378 442 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05421 Trre-Chr8 56073202 56076354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05421 97 633 Homeobox Transcription Factor Family AT5G41410 43.265 2.28e-131 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre8g05421 POX 1e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05421 - - tpra:123913365 1031.55