Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05419 ATGGGATTTCCAGTAGGATACACAGAACTTCTCTTCCCAAAATTAGTTCTTCATCTTCTCTCCATCTTCACTTTCATAAGAAAACTCATTTGCATCATTTTTCGCTATATGGGTCTCCCTGATTTCATCGAACCCGACATTACATGGCCCGAAACTTCAACCCGCATACCCGAATTCGAATCCGTTTCAGCTCTTCTTATCCGTGAAATCTTACCGGTTGTTAAGTTTATGGATTTGGTGGACCCACCTGAAAGCTGTGCTGTGTGTCTTACTGAGTTCGAGGAAAACGATGAGATCAGACGGTTAGCGAATTGTAGACACATTTTTCATCGAGGTTGTTTGGACCGTTGGATGGGTTATGATCAGAGAACGTGTCCTTTGTGTAGAACACCTTTTATACCTGATGATATGCAAAGCGCTTTTAATGAGAGATTATGGGCTGCTTCTGGTATACCTGAATTTCACTCTGATGTTCTTGCTTTGTAG 486 0.4177 MGFPVGYTELLFPKLVLHLLSIFTFIRKLICIIFRYMGLPDFIEPDITWPETSTRIPEFESVSALLIREILPVVKFMDLVDPPESCAVCLTEFEENDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDDMQSAFNERLWAASGIPEFHSDVLAL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05419 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 136 IPR013083 -
Trre8g05419 161 SMART ring_2 86 128 IPR001841 -
Trre8g05419 161 SMART ringv_2 85 129 IPR011016 GO:0008270
Trre8g05419 161 Pfam Ring finger domain 85 129 IPR001841 -
Trre8g05419 161 SUPERFAMILY RING/U-box 71 135 - -
Trre8g05419 161 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Trre8g05419 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 21 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05419 Trre-Chr8 56036630 56037115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05419 1 150 C3H Transcription Factor Family AT1G63840 58.710 3.72e-60 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05419 K16281 - rcu:8287413 276.559