Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05417 ATGTCTTCTGAACTCTATTCTTTTGGTACCACAACTTTCCACACACATTCAACCTCAGAACATGTCTCTACTGATGGAAGTGGAGACTTACCATCATTTTTCTCTGACTCTTTCCCTTTTTTCAACACTGAAGTTACTTCTCAACAAAATTCAAACCCATCATTATTTGATGAATCTCTTATTCCTTCTTCTCTAGATCCTTTTTCACCTTCTTTTTTCTCTTTTTCTCCTCCAACTGAAATTTTTCATCCTCAAACTAATAATAATAATAATAATGGAAGTTTCTCATCTTTCGATTTGTCCGAAGTTAAAAACGAGGAATCACAAATGAGTATTGATTATTATAACAATTACAACAACAATAGTAATACTCAATTTCTTCCTCATAGTTACAGTGGTGTTGAAAATGTATCAAAGTACATGCAAAGAAGCTTCAGTAGTAACTCTTTTGAGAAGAAGCCAAATTTACTATTTCAAACTCATCAAGATAATCTCATTGATTCATCAAAATTTCAAAGGCATGATTTAAGCTCCCCTGAAACTAATTTGAGAAGGGTTTGTAGCACAGGTGATTTGCAGAACATGAAAGCAAATAACATGTCTCCAACAGAGGGAAATTCGCAAGAGGAACAAAATTTCAAAGTAGGACGTTACAGTGCGGAAGAAAGAAAAGAAAGAATTTCGAAATACAGAGCGAAGAGAACTCAGAGGAACTTTAACAAGACCATTAAGTATGCATGTAGAAAGACATTAGCAGATAATCGACCGCGCGTAAGAGGAAGGTTTGCACGCAACGATGAGCCCAACGAGATTCCTAAGGCTCCATGTTTAATCAGAGATGAAGACGAAGTCGATTTTTGGATGGAAGAATTACGATTGCATGAAGACGATGTAACAGTGGGAGCAGCACAACAATATTTGAAGAGTAATACTAATAGTTATGGAGTTAGTCAGTTTCAATATTTTGGCTTATGA 975 0.3528 MSSELYSFGTTTFHTHSTSEHVSTDGSGDLPSFFSDSFPFFNTEVTSQQNSNPSLFDESLIPSSLDPFSPSFFSFSPPTEIFHPQTNNNNNNGSFSSFDLSEVKNEESQMSIDYYNNYNNNSNTQFLPHSYSGVENVSKYMQRSFSSNSFEKKPNLLFQTHQDNLIDSSKFQRHDLSSPETNLRRVCSTGDLQNMKANNMSPTEGNSQEEQNFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRVRGRFARNDEPNEIPKAPCLIRDEDEVDFWMEELRLHEDDVTVGAAQQYLKSNTNSYGVSQFQYFGL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05417 324 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 104 287 IPR045281 GO:0009909
Trre8g05417 324 Pfam CCT motif 223 265 IPR010402 GO:0005515
Trre8g05417 324 ProSiteProfiles CCT domain profile. 223 265 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05417 Trre-Chr8 56021398 56023087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05417 219 270 C2C2-CO-like Transcription Factor Family AT5G24930 50.000 6.19e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre8g05417 CCT 6.7e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05417 - - psat:127101452 429.098