Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05412 ATGGGCGGTTGTTGCTGTTGTGCTTCCAAGGAGACTGTATTGACTGCTCCACCTGCTTACTATTATCAGTATCCAAGAGCATCTGAGGAGCATGTTCCACTATCTTCTCACCAGGGTGCTCCCTCTGCTTTCTCTGGAAGGCTCTTGGTTGATACTAACCTAGATACTTCGAGTCCTGATACTTATAGACCACCTCCTGCTCCTCTCCCTTTCAATGTGACATCTGGTGCCACTCAGACTGCACCTGTGACTCAAGAAATTAGCTGTGACAAGAACAATACTTCGTCGATTTCTACAAATTCTAATTCAGTTCAAGAACCATCTGGAGATAATCACGGAACCTCACCTAAGCCAGAAGAACCAAAGGAATCAGAATGCAAAGGTCAGACTGATTTAGAGCTAGACTCAGCAAAGGATTCTGAAATTGAACTATCAAAGTTGGGCGAGCCTATAAATTTAGAGGAAGAGGAGGATACATGCCCAATATGTTTAGAAGAATATGATGAAGAAAATCCAAAACTCACCACAAATTGTGACCATCATTTTCACCTTGCTTGCATTCTAGAATGGATGGAAAGAAGTGAATCTTGCCCTGTCTGCGATCAGGTTTCTCCCACTCATTCCCAATTTCCGATCTTATATTTAGATATTTGTAAAGATATGCTATGA 669 0.42 MGGCCCCASKETVLTAPPAYYYQYPRASEEHVPLSSHQGAPSAFSGRLLVDTNLDTSSPDTYRPPPAPLPFNVTSGATQTAPVTQEISCDKNNTSSISTNSNSVQEPSGDNHGTSPKPEEPKESECKGQTDLELDSAKDSEIELSKLGEPINLEEEEDTCPICLEEYDEENPKLTTNCDHHFHLACILEWMERSESCPVCDQVSPTHSQFPILYLDICKDML 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05412 222 SMART ring_2 160 200 IPR001841 -
Trre8g05412 222 MobiDBLite consensus disorder prediction 72 112 - -
Trre8g05412 222 MobiDBLite consensus disorder prediction 52 129 - -
Trre8g05412 222 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 38 204 - -
Trre8g05412 222 ProSiteProfiles Zinc finger RING-type profile. 160 201 IPR001841 -
Trre8g05412 222 Pfam Ring finger domain 158 200 IPR001841 -
Trre8g05412 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 208 IPR013083 -
Trre8g05412 222 FunFam Putative E3 ubiquitin-protein ligase RHB1A 137 204 - -
Trre8g05412 222 SUPERFAMILY RING/U-box 154 206 - -
Trre8g05412 222 MobiDBLite consensus disorder prediction 113 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05412 Trre-Chr8 55962593 55964369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05412 1 202 C3H Transcription Factor Family AT5G41350 54.369 2.29e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05412 - - vra:106765380 339.732