Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05411 ATGGGCGGTTGTTGCTGTTGTGCTTCCAAGGAGACTGTATTGACTGCTCCACCTGCTTACTATTATTATCCAAGAGCATCTGAGGAGCATGTTCCACTATCTTCTCACCAGGGTGCTCCCTCTGCTTTCTCTGGAAGGCTCTTGGTTGATACTAACCTAGATACTTCGAGTCCTGATACTTATAGACCACCTCCTGCTCCTCTCCCTTTCAATGTGACATCTGGTGCCACTCAGACTGCACCTGTGACTCAAGAAATTAGCTGTGACAAGAACAATACTTCGTCGATTTCTACAAATTCTAATTCAGTTCAAGAACCATCTGGAGATAATCACGGAACCTCACCTAAGCCAGAAGAACCAAAGGAATCAGAATGCAAAGGTCAGACTGATTTAGAGCTAGACTCAGCAAAGGATTCTGAAATTGAACTATCAAAGTTGGGCGAGCCTATAAATTTAGAGGAAGAGGAGGATACATGCCCAATATGTTTAGAAGAATATGATGAAGAAAATCCAAAACTCACCACAAATTGTGACCATCATTTTCACCTTGCTTGCATTCTAGAATGGATGGAAAGAAGTGAATCTTGCCCTGTCTGCGATCAGGTTTCTCCCACTCATTCCCAATTTCCGATCTTATATTTAGATATTTGTAAAGATATGCTATGA 666 0.4189 MGGCCCCASKETVLTAPPAYYYYPRASEEHVPLSSHQGAPSAFSGRLLVDTNLDTSSPDTYRPPPAPLPFNVTSGATQTAPVTQEISCDKNNTSSISTNSNSVQEPSGDNHGTSPKPEEPKESECKGQTDLELDSAKDSEIELSKLGEPINLEEEEDTCPICLEEYDEENPKLTTNCDHHFHLACILEWMERSESCPVCDQVSPTHSQFPILYLDICKDML 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05411 221 SMART ring_2 159 199 IPR001841 -
Trre8g05411 221 MobiDBLite consensus disorder prediction 54 128 - -
Trre8g05411 221 MobiDBLite consensus disorder prediction 112 128 - -
Trre8g05411 221 FunFam Putative E3 ubiquitin-protein ligase RHB1A 136 203 - -
Trre8g05411 221 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 203 - -
Trre8g05411 221 MobiDBLite consensus disorder prediction 71 111 - -
Trre8g05411 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 207 IPR013083 -
Trre8g05411 221 Pfam Ring finger domain 157 199 IPR001841 -
Trre8g05411 221 ProSiteProfiles Zinc finger RING-type profile. 159 200 IPR001841 -
Trre8g05411 221 SUPERFAMILY RING/U-box 153 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05411 Trre-Chr8 55962593 55964369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05411 1 201 C3H Transcription Factor Family AT5G41350 54.634 3.81e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05411 - - vra:106765380 333.569