Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05410 ATGGCAAACGGGTCTTCTCTTGATCGTCTTGAAGCTAAAAATTTTACCGAATCTCATAGAAACGGCGATTGTCTTAATGAGGATTGTGTTGATAGTGCCGGTCATGACAAAGCTAAACAAAAATCTTTGTTTTGTCAAATTTTTTCGGTTTATCTTAAAGAGAATTGTAGTAGAGGCAATGTGAAGCCTGTGCCTGTGATGCTCGGGGATGGTCAATTGCTTGATTTATACCAACTTTTCTTCCTTGTGAAGGAAAAAGGTGGGTATGATGTGGTGTCGAGAAAAGGTTTGTGGGATTCTGTGATAGTTGAATTGGGTATGGACATTCCTGTTTTGGCTTCGGTGAAATTGGTTTATGACAGATATCTGCATGGTTTCGAAGATTGGCTCAGCAAAACTTTTGAAGAGAAGAGTTTAAAAAATGGGAATAATGGGTGTTTGAATTCATTGCCGGTAGATCTGGAAAAAGAGTTTCGAAGCCTATTATGCTCAAATCTAAAGGACAAAGATGATGATTTTGTCCCGCTAGAATCGAGCAACATCATAAAGCACATTGATTTGGTTAACCAAAAGAGTGGTGGTTATTTATTGGATTCCATAAACCTAACCAACAAATGTTTGGATGTCCAACAAGTTGATGGTGACAGTATTGATGATGACGATAAAATATTTGGGAATAGTCTTAAGGATTATCTAGCTGCCTCTCGCAAACGTAAACGGGAATCAATATCAGGAATGGTAAACTGGACGAGGCATATTGCAAAACATCCGTTTGATGCTGTAGCTCTACCATTACCAGAACCATCAAAATGGAAGGAATATAAAGGAGGTAATGACTTTTTTGTTCAGCTGCTGAGGGCAAGAGACGTTCTAGCGGTGAGAAAGAATGCGGACACAAACAGTGGATCATCTTCTCAGAAGGTGAAGATGCATCCTGCCATGTATGAGGATCCCGTTGGTCACCAGGGTACTATGAAATTGAGATGTAGTGAAAGGCTGCCTATCTCTCCTAAATCTCGCTGCACTTGCTGCAATTCTAAATCATGCTCTGCTAATGGAAATAAGTTGCATGGTTCAGTCAATATGACTGCCAAACCAGATGCCACTGAAAAGAAAAAATCGTCTTCCAAATCAAAATCGAACAAAAAGAAAAAACTTGTGCCATCTGAGGATGATTTTCGTGTAAAGCATGTTTCTATAGGTCATCTTTTCCAAGCGGAAGTCCCGCAATGGACTGATGAAGTTTATGTGAGTGACCCTAAATGGTTAGGCACACAAGTATGGCCTGTTAAAGATGACTCAAAACCTAGTACCAAAACAGACCTTGTTGTGAGAGAAAGACGAGGAAAGTGTAGTTGCGACATTCAAGGTTCTGTTGACTGTGTCAGATTTCTTATTGCTGAAAACAGAATGAAACTGAAGCTTGAATTGGGTTCTGCATTTTACCATTGGGGATTTGATAAAATGGGCGAGGAAGTTTCACTTCGATGGACAGCTGATGAAGAAAAGAAATTTAAGGATGCAATGAGGTTAAATATCCCCTCCCAAAACAAGTCTTTTTGGAACAATCCATCCAAATACTTTCTTAAGAAGACAAGAAAAGACATGGTGAGCTATTACTTCAATGCATATATTATTCAACTAAGAAGCTATCAGAATCGAGTGACTCCGAAGACTGTTGACAGTGATGACGACGAAGTCGAATTTGGATCTTTTGGTGATGGTTTTGGGAGGAGCAGTATCAAGCATCCACCTATGGAATTCATGGAGTGTTCAGAGAACAGGCAATGCTGGGATTATGAGTAG 1806 0.397 MANGSSLDRLEAKNFTESHRNGDCLNEDCVDSAGHDKAKQKSLFCQIFSVYLKENCSRGNVKPVPVMLGDGQLLDLYQLFFLVKEKGGYDVVSRKGLWDSVIVELGMDIPVLASVKLVYDRYLHGFEDWLSKTFEEKSLKNGNNGCLNSLPVDLEKEFRSLLCSNLKDKDDDFVPLESSNIIKHIDLVNQKSGGYLLDSINLTNKCLDVQQVDGDSIDDDDKIFGNSLKDYLAASRKRKRESISGMVNWTRHIAKHPFDAVALPLPEPSKWKEYKGGNDFFVQLLRARDVLAVRKNADTNSGSSSQKVKMHPAMYEDPVGHQGTMKLRCSERLPISPKSRCTCCNSKSCSANGNKLHGSVNMTAKPDATEKKKSSSKSKSNKKKKLVPSEDDFRVKHVSIGHLFQAEVPQWTDEVYVSDPKWLGTQVWPVKDDSKPSTKTDLVVRERRGKCSCDIQGSVDCVRFLIAENRMKLKLELGSAFYHWGFDKMGEEVSLRWTADEEKKFKDAMRLNIPSQNKSFWNNPSKYFLKKTRKDMVSYYFNAYIIQLRSYQNRVTPKTVDSDDDEVEFGSFGDGFGRSSIKHPPMEFMECSENRQCWDYE 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05410 601 SMART bright_3 39 132 IPR001606 GO:0003677
Trre8g05410 601 ProSiteProfiles ARID domain profile. 38 131 IPR001606 GO:0003677
Trre8g05410 601 MobiDBLite consensus disorder prediction 354 388 - -
Trre8g05410 601 SUPERFAMILY ARID-like 46 132 IPR036431 GO:0003677
Trre8g05410 601 CDD ARID 57 127 - -
Trre8g05410 601 SMART ELM2_2 398 448 IPR000949 -
Trre8g05410 601 SMART ARID_2 35 127 - -
Trre8g05410 601 Pfam ARID/BRIGHT DNA binding domain 48 127 IPR001606 GO:0003677
Trre8g05410 601 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 35 596 - -
Trre8g05410 601 Gene3D - 25 141 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05410 Trre-Chr8 55952081 55956003 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre8g05410 ARID 1.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05410 - - psat:127105471 786.563