Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05408 ATGGAAGACGGGTCTTCCCTTGATTGCCTTGAAGCTAAAACTTTTACCGAATCTCATGGAAACGACGATAGTCTTATTGAGGATTGTGTTGATAGTGCTGATCATGACAGAGCTAAACAAAAATCTTTGTTTTGTCAAAACTTTTTGGTTTACCTTGAGGAGAATTGTACTAGAGGCAATGTGGGGTCTGTGCCTGTGATACTCGGTGACGGTCAATCGCTTGATTTATACCAACTTTTTTCCCTTGTGAAGGAAAAAGGTGGGTATGACGTGGTATCAAGAAAAGGGCTGTGGCATTCTGTGATAGTTGAACTGGGTTTGGACCTTCATGTTTTGGCTTCGGTGAAATTAATTTATTACAAATATCTGAGTGATTTCGAAGGCTGGCTCAGCAAAACCAAAAGAGCGGCGATTAACCAAAAGAGTGATGGTTCTTTATTGGGCACCAAAAACCTAAACAACAAATGTGAGGGTGTCCAACATGTTGGCGGTGATGATGAAAAAATCGGTAATGGTGTTAAGGGTGACCTAGCTGCCTCTTATGTGGATGTTTCTGGGGAGGAATTTGGTTCTCGCAAACGTAAGCGGGAATCAATATCCGGAATGGTAAACTCAACAAGGCATATTGCAAAACATCCCATTGATCTTGTAGCTCAGAATGTGGAACCAAACAATGGATCATCTTCTCAGAAGGTGAAGATGCATCCTGCCATGTATGAGGATCCGGTAAAGCATGTTCCTATAGGTGAAAAGAAAAAATCGGCCGGCAAATCAAAATTGACCAAAAAGAAAAAGTCTGAGCCATCTGGGGGTGATTATCCTGTAAAGCGTGTTCCTATAGGTCCTCGTTTCCAAGCTGAAGTCCCGCAATGGACTGATGAAGTTTATGTGAGTGACCCTAAATGGTTAGGCACACAAGTATGGCCTGTTAAAGATGACTCGGAACCTAGTACTAAAACAGACCTTGATGTGAGAGGAAGGCGAGGAAAGTGTAGTTGCGACATTCAAGAGAACAGGAAAGTGTAG 1026 0.424 MEDGSSLDCLEAKTFTESHGNDDSLIEDCVDSADHDRAKQKSLFCQNFLVYLEENCTRGNVGSVPVILGDGQSLDLYQLFSLVKEKGGYDVVSRKGLWHSVIVELGLDLHVLASVKLIYYKYLSDFEGWLSKTKRAAINQKSDGSLLGTKNLNNKCEGVQHVGGDDEKIGNGVKGDLAASYVDVSGEEFGSRKRKRESISGMVNSTRHIAKHPIDLVAQNVEPNNGSSSQKVKMHPAMYEDPVKHVPIGEKKKSAGKSKLTKKKKSEPSGGDYPVKRVPIGPRFQAEVPQWTDEVYVSDPKWLGTQVWPVKDDSEPSTKTDLDVRGRRGKCSCDIQENRKV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05408 341 ProSiteProfiles ELM2 domain profile. 276 341 IPR000949 -
Trre8g05408 341 SMART bright_3 39 132 IPR001606 GO:0003677
Trre8g05408 341 Pfam ARID/BRIGHT DNA binding domain 46 127 IPR001606 GO:0003677
Trre8g05408 341 SMART ELM2_2 278 328 IPR000949 -
Trre8g05408 341 SMART ARID_2 35 127 - -
Trre8g05408 341 ProSiteProfiles ARID domain profile. 38 131 IPR001606 GO:0003677
Trre8g05408 341 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 34 336 - -
Trre8g05408 341 SUPERFAMILY ARID-like 38 134 IPR036431 GO:0003677
Trre8g05408 341 CDD ARID 51 127 - -
Trre8g05408 341 MobiDBLite consensus disorder prediction 241 278 - -
Trre8g05408 341 MobiDBLite consensus disorder prediction 241 271 - -
Trre8g05408 341 Gene3D - 24 143 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05408 Trre-Chr8 55919228 55920855 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre8g05408 ARID 3.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05408 - - psat:127100343 328.176