Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05398 ATGGCGCCGTGGTGGGGAAAGCCTTCGTCCAAGGAGGTGAAGGAGAAGAAGACAAACCGGGAAAATATTTTTTATATGATACAACGAAAATTTAAAAAGGCTTCCGAAGAGAAGAGCAGCAATAAATCAGGAGGATCTAGGAAACATCATAGTAGCACTGTCTCAAAGAAGGGATCTAGATCCTTTGGACCTTCAACAAAATCACGGTCACCCTCTCCAACCGTGTCCCGCTGTCTAAGTTTTGCAGACAATCGTTATTCTCGGCCACTCCCAGTGTCGGGCTCGCCGCTTCCTACTACTAGTAATGCAAATTCTGGAATTATTTTAACGTCAAAACTGGAAAGAGCCGCAGGAGATCCTACACCTAGACCGTCTATATATTTTCCCCTGCCAGAACCTGGATACCTAACTATAAGGGGTGAAGTTACAGACGTGGAAGGAGATATAGTCACTGCATCTGTTTCCTGTGACAGCTCTGTTGATAGTGGTGATGAGTCTGATTTGCATCTTGTTAGTCCTCTGGCATCTGACTGTGAAAATAGAAACACAGCCACCATTAACAATTCTTTCAGTGTGGTGCGCAAAGATCAATCACATATTACTATCGAAAGAACCTCAAGAGCACCCTCAAAACCAGCTCATAAATTTTGCAACAATAAGCTTTTGTCTACCTCGCCAAAAAGGGTTCCTTTGCCTCTGCAAATAGGTCGCCCGGGTGGTTTTTGCAGTGCTCCAGATAGTTCAAAGTCTAGTCCTAGAAGTCCAATGCGAGCATTTGGTCCAGCAGATAGTTCAAAGTCTAGTCCTAGAAGTCCAATGCGAGCATTTGGTCCAGAGCAAGTGTTAAACTCAGGATTATGGATAGGAAAGCCTTATCCAGATATAGCTTCAGGGCACTGCTCTAGTCCAGGTTCAGGCCATGATTCTAGTAATAATTCAGTTGGTGGGGACCTGTCAGCATTTAGAGCACACAACAAGTGTAGCGCCGAGTGTTCCCCAATACCTAGTCCCAGAATGACAAGCCCCGGTCCCAGTTCCAGGATACAGAGCAATAATGTCAGCCCTCTACATCCAAAATCTGGAGGTGCCGCATCAGAGTTTCCTACAAGACGTCCTGATGTCATTAAACAACAAAGTCACCGATTGCCGCTTCCTCCAATAAAAGTGACTAAATCTTGTCCATTTTCTCCGACCTATTCTGCGTCTTCAACTCCTTCAGCTCCTCGAAGCCCTGCCAGACCAGAAAATTCAACAAGCCCAGGTTCACGCTGGACAAAAGGGCAGTTGCTTGGAAGGGGAACATTTGGGCATGTTTATCTTGGTTTCAGCAGAGAAAGTGGCGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCAGATGACCCTAAATCACGAGAATGTGCACAGCAACTTGGCCAAGAAATTGCACTGCTAAGTCAATTGCGGCATCCAAACATAGTCCAGTATTATGGGTCTGAAACGGTTGATGATAAACTTTATATTTACTTGGAGTACGTTTCTGGTGGGTCAATCTATAAATTGCTTCAAGAATACGGACAATTAGGTGAAATTGCAATTCGGAATTACACTCGGCAAATTCTTTCAGGACTTGCATATTTGCATGCAAAGAACACTGTTCACAGGGACATCAAAGGAGCAAACATATTGGTGGACCCTAATGGACAGATAAAACTGGCAGATTTTGGGATGGCAAAGCATATAACTGGGCAGACTCTTCCATTTTCTTTTAAAGGAAGTCCTTATTGGATGGCACCTGAGGTTATAAAAAATTCAGACGGTTGTAATCTTGCTGTTGATATATGGAGTTTGGGATGCACTGTTTTGGAGATGGCAACAACAAAACCTCCTTGGGGCCAGTATGAAGGGGTTGCTGCAATGTTTAAGATCGGGAACAGCAGAGAACTTCCTACAATTCCAGATCATTTATCAGAAGAAGGGAAAGATTTTGTCAGGCTTTGTTTGAAAAGGGATCCACTTGATCGTCCTTCGGCTGATCAACTTCTAGATCACCCATTTGTTAAAAATGCTTCGCTGGAAAGATTCATTCTGAATGCTGATCCTTCAGAATCCCCATCTTCAGTCATAAATGCAATGAGATCTCTGGCCATTGGACCGTCTAAACATAATGTATGTTTAGACTTGGAAGCAGCTGGTATCCCTGGTATCCCTCCGACTAGAAACTTCAGAGTTGGTTATGGATCAAGCAATGCTCATAAACCACCAAGGATCGTGTCATGTCCCGTTTCTCCATCTTTGGGGCTACGTTTGCCTTCTAGATCAACGAATTCGAGTGGAATGATATCTCCCTCTCAAACATCTAGTTCTCATAATGCATCTGGACCATCTACTCCGCAAACCTGTAGAAGTGGGACAATCCCATATCAACAAAGAAAGCAACCTATATTTCCACAAGAAGCTCTGGGTATGATTCCAAAATCTCCAAAATCTCCTAATGATTTTCAGTCAAATGGAAGCACTGCTTATCAAGGTCCAAAGCATGGTCAGATTCAGAGAAAATCTCCAGCTAGACATGCTTGCCGCCGGGATTTAATTTCACCTGAAAATGATTCTCTTGCAAACCATAATAGGAGGGCCGTTGAAGGAGTCCCAAGAGAATTTCGTACTGGGAAGTCTAGTTTGCCTGAGGTTGATTGTACGTCTCAACAACAGCGGGAGAGGGACAATGCTCAGTCAAATGCATTCATAGATCATAAGTCTAGTGCACCAGTGGTTGGGAGAGGGACAATGCGCAACCGAATGCATTCATAG 2790 0.4391 MAPWWGKPSSKEVKEKKTNRENIFYMIQRKFKKASEEKSSNKSGGSRKHHSSTVSKKGSRSFGPSTKSRSPSPTVSRCLSFADNRYSRPLPVSGSPLPTTSNANSGIILTSKLERAAGDPTPRPSIYFPLPEPGYLTIRGEVTDVEGDIVTASVSCDSSVDSGDESDLHLVSPLASDCENRNTATINNSFSVVRKDQSHITIERTSRAPSKPAHKFCNNKLLSTSPKRVPLPLQIGRPGGFCSAPDSSKSSPRSPMRAFGPADSSKSSPRSPMRAFGPEQVLNSGLWIGKPYPDIASGHCSSPGSGHDSSNNSVGGDLSAFRAHNKCSAECSPIPSPRMTSPGPSSRIQSNNVSPLHPKSGGAASEFPTRRPDVIKQQSHRLPLPPIKVTKSCPFSPTYSASSTPSAPRSPARPENSTSPGSRWTKGQLLGRGTFGHVYLGFSRESGEMCAMKEVTLFSDDPKSRECAQQLGQEIALLSQLRHPNIVQYYGSETVDDKLYIYLEYVSGGSIYKLLQEYGQLGEIAIRNYTRQILSGLAYLHAKNTVHRDIKGANILVDPNGQIKLADFGMAKHITGQTLPFSFKGSPYWMAPEVIKNSDGCNLAVDIWSLGCTVLEMATTKPPWGQYEGVAAMFKIGNSRELPTIPDHLSEEGKDFVRLCLKRDPLDRPSADQLLDHPFVKNASLERFILNADPSESPSSVINAMRSLAIGPSKHNVCLDLEAAGIPGIPPTRNFRVGYGSSNAHKPPRIVSCPVSPSLGLRLPSRSTNSSGMISPSQTSSSHNASGPSTPQTCRSGTIPYQQRKQPIFPQEALGMIPKSPKSPNDFQSNGSTAYQGPKHGQIQRKSPARHACRRDLISPENDSLANHNRRAVEGVPREFRTGKSSLPEVDCTSQQQRERDNAQSNAFIDHKSSAPVVGRGTMRNRMHS 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05398 929 CDD STKc_MEKK1_plant 423 680 - -
Trre8g05398 929 ProSitePatterns Protein kinases ATP-binding region signature. 430 453 IPR017441 GO:0005524
Trre8g05398 929 MobiDBLite consensus disorder prediction 814 929 - -
Trre8g05398 929 MobiDBLite consensus disorder prediction 332 428 - -
Trre8g05398 929 MobiDBLite consensus disorder prediction 740 798 - -
Trre8g05398 929 SMART serkin_6 424 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05398 929 MobiDBLite consensus disorder prediction 341 358 - -
Trre8g05398 929 Gene3D Transferase(Phosphotransferase) domain 1 422 704 - -
Trre8g05398 929 MobiDBLite consensus disorder prediction 302 317 - -
Trre8g05398 929 Pfam Protein kinase domain 425 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05398 929 MobiDBLite consensus disorder prediction 822 840 - -
Trre8g05398 929 ProSiteProfiles Protein kinase domain profile. 424 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05398 929 MobiDBLite consensus disorder prediction 393 425 - -
Trre8g05398 929 MobiDBLite consensus disorder prediction 887 911 - -
Trre8g05398 929 FunFam Mitogen-activated protein kinase kinase kinase 422 704 - -
Trre8g05398 929 MobiDBLite consensus disorder prediction 1 77 - -
Trre8g05398 929 SUPERFAMILY Protein kinase-like (PK-like) 422 789 IPR011009 -
Trre8g05398 929 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 36 689 - -
Trre8g05398 929 MobiDBLite consensus disorder prediction 761 798 - -
Trre8g05398 929 MobiDBLite consensus disorder prediction 9 44 - -
Trre8g05398 929 MobiDBLite consensus disorder prediction 298 317 - -
Trre8g05398 929 MobiDBLite consensus disorder prediction 56 77 - -
Trre8g05398 929 MobiDBLite consensus disorder prediction 228 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05398 Trre-Chr8 55845614 55850120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05398 3 806 MAP Kinase Kinase Kinase AT1G63700 57.335 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre8g05398 Pkinase 1.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05398 K20717 - gmx:100814422 1027.7