Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05397 ATGGCGCCGTGGTGGGGAAAGCCTTCGTCCAAGGAGGTGAAGGAGAAGAAGACAAACCGGGAAAATATTTTTTATATGATACAACGAAAATTTAAAAAGGCTTCCGAAGAGAAGAGCAGCAATAAATCAGGAGGATCTAGGAAACATCATAGTAGCACTGTCTCAAAGAAGGGATCTAGATCCTTTGGACCTTCAACAAAATCACGGTCACCCTCTCCAACCGTGTCCCGCTGTCTAAGTTTTGCAGACAATCGTTATTCTCGGCCACTCCCAGTGTCGGGCTCGCCGCTTCCTACTACTAGTAATGCAAATTCTGGAATTATTTTAACGTCAAAACTGGAAAGAGCCGCAGGAGATCCTACACCTAGACCGTCTATATATTTTCCCCTGCCAGAACCTGGATACCTAACTATAAGGGGTGAAGTTACAGACGTGGAAGGAGATATAGTCACTGCATCTGTTTCCTGTGACAGCTCTGTTGATAGTGGTGATGAGTCTGATTTGCATCTTGTTAGTCCTCTGGCATCTGACTGTGAAAATAGAAACACAGCCACCATTAACAATTCTTTCAGTGTGGTGCGCAAAGATCAATCACATATTACTATCGAAAGAACCTCAAGAGCACCCTCAAAACCAGCTCATAAATTTTGCAACAATAAGCTTTTGTCTACCTCGCCAAAAAGGGTTCCTTTGCCTCTGCAAATAGGTCGCCCGGGTGGTTTTTGCAGTGCTCCAGATAGTTCAAAGTCTAGTCCTAGAAGTCCAATGCGAGCATTTGGTCCAGCAGATAGTTCAAAGTCTAGTCCTAGAAGTCCAATGCGAGCATTTGGTCCAGAGCAAGTGTTAAACTCAGGATTATGGATAGGAAAGCCTTATCCAGATATAGCTTCAGGGCACTGCTCTAGTCCAGGTTCAGGCCATGATTCTAGTAATAATTCAGTTGGTGGGGACCTGTCAGCATTTAGAGCACACAACAAGTGTAGCGCCGAGTGTTCCCCAATACCTAGTCCCAGAATGACAAGCCCCGGTCCCAGTTCCAGGATACAGAGCAATAATGTCAGCCCTCTACATCCAAAATCTGGAGGTGCCGCATCAGAGTTTCCTACAAGACGTCCTGATGTCATTAAACAACAAAGTCACCGATTGCCGCTTCCTCCAATAAAAGTGACTAAATCTTGTCCATTTTCTCCGACCTATTCTGCGTCTTCAACTCCTTCAGCTCCTCGAAGCCCTGCCAGACCAGAAAATTCAACAAGCCCAGGTTCACGCTGGACAAAAGGGCAGTTGCTTGGAAGGGGAACATTTGGGCATGTTTATCTTGGTTTCAGCAGAGAAAGTGGCGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCAGATGACCCTAAATCACGAGAATGTGCACAGCAACTTGGCCAAGAAATTGCACTGCTAAGTCAATTGCGGCATCCAAACATAGTCCAGTATTATGGGTCTGAAACGGTTGATGATAAACTTTATATTTACTTGGAGTACGTTTCTGGTGGGTCAATCTATAAATTGCTTCAAGAATACGGACAATTAGGTGAAATTGCAATTCGGAATTACACTCGGCAAATTCTTTCAGGACTTGCATATTTGCATGCAAAGAACACTGTTCACAGGGACATCAAAGGAGCAAACATATTGGTGGACCCTAATGGACAGATAAAACTGGCAGATTTTGGGATGGCAAAGCATATAACTGGGCAGACTCTTCCATTTTCTTTTAAAGGAAGTCCTTATTGGATGGCACCTGAGGTTATAAAAAATTCAGACGGTTGTAATCTTGCTGTTGATATATGGAGTTTGGGATGCACTGTTTTGGAGATGGCAACAACAAAACCTCCTTGGGGCCAGTATGAAGGGATCGGGAACAGCAGAGAACTTCCTACAATTCCAGATCATTTATCAGAAGAAGGGAAAGATTTTGTCAGGCTTTGTTTGAAAAGGGATCCACTTGATCGTCCTTCGGCTGATCAACTTCTAGATCACCCATTTGTTAAAAATGCTTCGCTGGAAAGATTCATTCTGAATGCTGATCCTTCAGAATCCCCATCTTCAGTCATAAATGCAATGAGATCTCTGGCCATTGGACCGTCTAAACATAATGTATGTTTAGACTTGGAAGCAGCTGGTATCCCTGGTATCCCTCCGACTAGAAACTTCAGAGTTGGTTATGGATCAAGCAATGCTCATAAACCACCAAGGATCGTGTCATGTCCCGTTTCTCCATCTTTGGGGCTACGTTTGCCTTCTAGATCAACGAATTCGAGTGGAATGATATCTCCCTCTCAAACATCTAGTTCTCATAATGCATCTGGACCATCTACTCCGCAAACCTGTAGAAGTGGGACAATCCCATATCAACAAAGAAAGCAACCTATATTTCCACAAGAAGCTCTGGGTATGATTCCAAAATCTCCAAAATCTCCTAATGATTTTCAGTCAAATGGAAGCACTGCTTATCAAGGTCCAAAGCATGGTCAGATTCAGAGAAAATCTCCAGCTAGACATGCTTGCCGCCGGGATTTAATTTCACCTGAAAATGATTCTCTTGCAAACCATAATAGGAGGGCCGTTGAAGGAGTCCCAAGAGAATTTCGTACTGGGAAGTCTAGTTTGCCTGAGGTTGATTGTACGTCTCAACAACAGCGGGAGAGGGACAATGCTCAGTCAAATGCATTCATAGATCATAAGTCTAGTGCACCAGTGGTTGGGAGAGGGACAATGCGCAACCGAATGCATTCATAG 2772 0.4394 MAPWWGKPSSKEVKEKKTNRENIFYMIQRKFKKASEEKSSNKSGGSRKHHSSTVSKKGSRSFGPSTKSRSPSPTVSRCLSFADNRYSRPLPVSGSPLPTTSNANSGIILTSKLERAAGDPTPRPSIYFPLPEPGYLTIRGEVTDVEGDIVTASVSCDSSVDSGDESDLHLVSPLASDCENRNTATINNSFSVVRKDQSHITIERTSRAPSKPAHKFCNNKLLSTSPKRVPLPLQIGRPGGFCSAPDSSKSSPRSPMRAFGPADSSKSSPRSPMRAFGPEQVLNSGLWIGKPYPDIASGHCSSPGSGHDSSNNSVGGDLSAFRAHNKCSAECSPIPSPRMTSPGPSSRIQSNNVSPLHPKSGGAASEFPTRRPDVIKQQSHRLPLPPIKVTKSCPFSPTYSASSTPSAPRSPARPENSTSPGSRWTKGQLLGRGTFGHVYLGFSRESGEMCAMKEVTLFSDDPKSRECAQQLGQEIALLSQLRHPNIVQYYGSETVDDKLYIYLEYVSGGSIYKLLQEYGQLGEIAIRNYTRQILSGLAYLHAKNTVHRDIKGANILVDPNGQIKLADFGMAKHITGQTLPFSFKGSPYWMAPEVIKNSDGCNLAVDIWSLGCTVLEMATTKPPWGQYEGIGNSRELPTIPDHLSEEGKDFVRLCLKRDPLDRPSADQLLDHPFVKNASLERFILNADPSESPSSVINAMRSLAIGPSKHNVCLDLEAAGIPGIPPTRNFRVGYGSSNAHKPPRIVSCPVSPSLGLRLPSRSTNSSGMISPSQTSSSHNASGPSTPQTCRSGTIPYQQRKQPIFPQEALGMIPKSPKSPNDFQSNGSTAYQGPKHGQIQRKSPARHACRRDLISPENDSLANHNRRAVEGVPREFRTGKSSLPEVDCTSQQQRERDNAQSNAFIDHKSSAPVVGRGTMRNRMHS 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05397 923 SMART serkin_6 424 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05397 923 Gene3D Transferase(Phosphotransferase) domain 1 422 698 - -
Trre8g05397 923 ProSitePatterns Protein kinases ATP-binding region signature. 430 453 IPR017441 GO:0005524
Trre8g05397 923 MobiDBLite consensus disorder prediction 816 834 - -
Trre8g05397 923 Pfam Protein kinase domain 425 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05397 923 SUPERFAMILY Protein kinase-like (PK-like) 422 783 IPR011009 -
Trre8g05397 923 MobiDBLite consensus disorder prediction 332 428 - -
Trre8g05397 923 MobiDBLite consensus disorder prediction 808 923 - -
Trre8g05397 923 FunFam Mitogen-activated protein kinase kinase kinase 422 698 - -
Trre8g05397 923 MobiDBLite consensus disorder prediction 341 358 - -
Trre8g05397 923 MobiDBLite consensus disorder prediction 302 317 - -
Trre8g05397 923 MobiDBLite consensus disorder prediction 755 792 - -
Trre8g05397 923 MobiDBLite consensus disorder prediction 393 425 - -
Trre8g05397 923 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 36 683 - -
Trre8g05397 923 MobiDBLite consensus disorder prediction 881 905 - -
Trre8g05397 923 MobiDBLite consensus disorder prediction 1 77 - -
Trre8g05397 923 MobiDBLite consensus disorder prediction 734 792 - -
Trre8g05397 923 CDD STKc_MEKK1_plant 423 674 - -
Trre8g05397 923 MobiDBLite consensus disorder prediction 9 44 - -
Trre8g05397 923 ProSiteProfiles Protein kinase domain profile. 424 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05397 923 MobiDBLite consensus disorder prediction 298 317 - -
Trre8g05397 923 MobiDBLite consensus disorder prediction 56 77 - -
Trre8g05397 923 MobiDBLite consensus disorder prediction 228 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05397 Trre-Chr8 55845614 55850120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05397 3 800 MAP Kinase Kinase Kinase AT1G63700 56.724 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre8g05397 Pkinase 6.7e-69 CL0016