Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05395 ATGGAGAAGGAGGAAGATGTTAAGGTTGGAGCAAACAAATTCTCAGAGAGACAGCCATTAGGGACAGCAGCACAAAGTGACATCAAAGACTACAAAGAACCACCACCTGCTCCATTATTTGAGCCTGGTGAGCTCAAGTCATGGTCTTTTTACAGAGCTGGAATAGCTGAGTTCATAGCTACTTTCTTGTTCTTGTATATCACCATTTTGACTGTAATGGGTGTTAACAGATCAACCTCCAAATGTTCCTCTGTTGGTATTCAAGGTATTGCTTGGTCTTTTGGTGGTATGATCTTTGCCCTTGTTTACTGCACTGCTGGAATTTCAGGTGGACACATAAACCCAGCTGTGACATTTGGTCTGTTTTTGGCAAGGAAGCTATCTCTTACAAGAGCTATATTCTACATTGTGATGCAATGTCTTGGGGCTATTTGTGGTGCTGGTGATGGACTTGGAGCTGAGATTGTTGGTACCTTTGTTCTTGTCTACACTGTTTTTTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCTCATGTTCCTATATTGGCTCCTCTTCCAATTGGGTTTGCTGTGTTTTTGGTCCACTTGGCTACAATTCCCATTACAGGAACTTGCATTAACCCAGCTAGGAGTCTTGGAGCTGCCATAATCTTTAACAAGGACTTAGCTTGGGATGACCATTGGATATTCTGGGTTGGACCTTTTATTGGAGCTGCTCTTGCTGCTGTGTATCACCAGATTGTCATCCGAGCCATTCCTTTCAAGACAAGGGATTGA 780 0.4308 MEKEEDVKVGANKFSERQPLGTAAQSDIKDYKEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYITILTVMGVNRSTSKCSSVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTCINPARSLGAAIIFNKDLAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKTRD 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05395 259 Gene3D Glycerol uptake facilitator protein. 37 148 IPR023271 -
Trre8g05395 259 Gene3D Glycerol uptake facilitator protein. 149 257 IPR023271 -
Trre8g05395 259 SUPERFAMILY Aquaporin-like 44 251 IPR023271 -
Trre8g05395 259 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05395 259 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05395 259 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05395 259 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05395 259 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05395 259 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 148 IPR034294 -
Trre8g05395 259 FunFam Putative aquaporin PIP-type 7a 143 254 - -
Trre8g05395 259 CDD MIP 52 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05395 259 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Trre8g05395 259 Pfam Major intrinsic protein 44 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05395 259 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05395 Trre-Chr8 55838541 55839958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05395 3 258 Major Intrinsic Protein MIP AT4G23400 81.625 2.12e-158 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05395 K09872 - aew:130792759 474.167