Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05394 ATGGAGAAGGAGGAAGATGTTAAGGTTGGAGCAAACAAATTCTCAGAGAGACAGCCATTAGGGACAGCAGCACAAAGTGACATCAAAGACTACAAAGAACCACCACCTGCTCCATTATTTGAGCCTGGTGAGCTCAAGTCATGGTCTTTTTACAGAGCTGGAATAGCTGAGTTCATAGCTACTTTCTTGTTCTTGTATATCACCATTTTGACTGTAATGGGTGTTAACAGATCAACCTCCAAATGTTCCTCTGTTGGTATTCAAGGTATTGCTTGGTCTTTTGGTGGTATGATCTTTGCCCTTGTTTACTGCACTGCTGGAATTTCAGGTGGACACATAAACCCAGCTGTGACATTTGGTCTGTTTTTGGCAAGGAAGCTATCTCTTACAAGAGCTATATTCTACATTGTGATGCAATGTCTTGGGGCTATTTGTGGTGCTGGTGTGGTGAAGGGTTTTGAAGGTGATGGACTTGGAGCTGAGATTGTTGGTACCTTTGTTCTTGTCTACACTGTTTTTTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCTCATGTTCCTATATTGGCTCCTCTTCCAATTGGGTTTGCTGTGTTTTTGGTCCACTTGGCTACAATTCCCATTACAGGAACTTGCATTAACCCAGCTAGGAGTCTTGGAGCTGCCATAATCTTTAACAAGGACTTAGCTTGGGATGACCATTGGATATTCTGGGTTGGACCTTTTATTGGAGCTGCTCTTGCTGCTGTGTATCACCAGATTGTCATCCGAGCCATTCCTTTCAAGACAAGGGATTGA 801 0.432 MEKEEDVKVGANKFSERQPLGTAAQSDIKDYKEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYITILTVMGVNRSTSKCSSVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFEGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTCINPARSLGAAIIFNKDLAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKTRD 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05394 266 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 261 IPR034294 -
Trre8g05394 266 Pfam Major intrinsic protein 44 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05394 266 Pfam Major intrinsic protein 155 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05394 266 Gene3D Glycerol uptake facilitator protein. 37 154 IPR023271 -
Trre8g05394 266 Gene3D Glycerol uptake facilitator protein. 155 264 IPR023271 -
Trre8g05394 266 SUPERFAMILY Aquaporin-like 44 258 IPR023271 -
Trre8g05394 266 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05394 266 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05394 266 PRINTS Major intrinsic protein family signature 236 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05394 266 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05394 266 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05394 266 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g05394 266 FunFam Putative aquaporin PIP-type 7a 137 261 - -
Trre8g05394 266 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Trre8g05394 266 MobiDBLite consensus disorder prediction 1 30 - -
Trre8g05394 266 CDD MIP 52 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05394 Trre-Chr8 55838541 55839958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05394 3 265 Major Intrinsic Protein MIP AT4G23400 83.746 4.67e-164 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05394 K09872 - gmx:121174914 489.574