Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05390 ATGGTGCAAGAAAATATCATGAAGGAACAACTTGCTTTGGCAGTTAGAAGCATTCAATGGAGTTATATAATTTTCTGGTCTGAATCTCCTAACCAACCTGGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGAAATTAAGACAAGGAAAACAAGTCAAGAAGTGGAGCTTAGTTCTGATGAAATAGGCTTGCAGAGAAGTGAACAACTAAGAGAGCTTTTCAGGACCCTTAAACCTACAGAAACAAGTCCTCCAACAAAAAAGCCTTCTGCAGCACTTTCACCTGATGACCTTACAGATACTGAATGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTCTAGCAAACGACGAACCAATTTGGCTTATGGATGCGTATTCTGTTGATTGCAAAGAGTTTAATCGCTCTCTCCTCGCAAAGACAGTGGTGTGCTTTCCTTTTATGAAAGGGGTTATTGAGCTAGGCACAACTGATATGGTAATGGAAGATCTCAGTATCATTCAACAGGTCAAAACTTCTTTATCGAATATTCTAAGTGTCGATGACCCTATTAACGTTCAAGCGACATTGAATCCGAGAAATAATGAAGATGTTGCTCATGTAGAATTTGATCATATTGATTACAATGTTGAATTAATTCCAGAAGTTGGTTATGACATAATCAACACAGAAACCTCACCTAATGGAAGTTCAAATGCCTTACAAATCAATCAACTACCGCCAGATGAAACATTCATGGTTGAAAGCTGGCAAATTATGGATGATGATTTGATCCATAACTCCATGAATTCAAGTGATTGCATATCACAAACTATTGCTTCTGTTCCTAGAAGTGGAGAAGATTGCAACAATAACCAAAAAATGACCTCAGTGGATCCACTAAGATACGATTGCCATTATCAGAAAATTCTTTCAGACCTATTGACAAACAATGACCAATTAAGTATGGGAATGCATTTTCAAAACTTTCATCAAGATTCAAGCTTTTGTGCTTGGAACAAAAGAGGGCAAGTGGATTGCCAAAGGCCAAGACAAGGAAACTCACAAAAGCTATTGAAGAAAATGTTGTTAGAAGTTCCGCGGATGCACATGGATGGTTTGGTTGAATCTCAAGAAGAGAATGACTATAGAGAGGGAACAAGACTAGAAGCTGATGAAGGTATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCAAAACTTAATGAAAGGTTTTTAACTCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATATCTTAGCAAGCTTGAGAAAAGGATAAAAGAGTTAGAAGCTCAAAAAGAACCAATAGATATAGAGTCTAGAAGTAAAAAATCACATCATGATTTGTTGGAGAGGACTTGTGATGATTATTATAACAACAAAACTAACAATGGCAAGAAACCAATGATGAAGAAGAGGAAAATATGTGACATAGGTGAGACAAGGAGACAGATATTTTCTGATGCTTTAAAAGGAAGTTCTAATAGTGATGTTACTGTCAGTATGAGTGACAATGGAGTTGTGATTGAAATGAAGTGTCCTTCTAGAGAAGGAAGGATATTGGAAATTATGGATGCAGTTAACAATCTCAACATGGATTTTAATTCAGTTCAATCTACAGATTCCGATGGGAGGCTTCATGTGATCATTAGATCTAAGTTCAAAGGACCAGCTAATGCAACAACAAAAAGGATCAAACAAGCCCTACAAAAAGTGGCTTCAAAGTTTTGA 1800 0.3706 MVQENIMKEQLALAVRSIQWSYIIFWSESPNQPGVLSWGEGYYNGEIKTRKTSQEVELSSDEIGLQRSEQLRELFRTLKPTETSPPTKKPSAALSPDDLTDTEWYYLVCMSFVFNIGQGLPGRALANDEPIWLMDAYSVDCKEFNRSLLAKTVVCFPFMKGVIELGTTDMVMEDLSIIQQVKTSLSNILSVDDPINVQATLNPRNNEDVAHVEFDHIDYNVELIPEVGYDIINTETSPNGSSNALQINQLPPDETFMVESWQIMDDDLIHNSMNSSDCISQTIASVPRSGEDCNNNQKMTSVDPLRYDCHYQKILSDLLTNNDQLSMGMHFQNFHQDSSFCAWNKRGQVDCQRPRQGNSQKLLKKMLLEVPRMHMDGLVESQEENDYREGTRLEADEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLSKLEKRIKELEAQKEPIDIESRSKKSHHDLLERTCDDYYNNKTNNGKKPMMKKRKICDIGETRRQIFSDALKGSSNSDVTVSMSDNGVVIEMKCPSREGRILEIMDAVNNLNMDFNSVQSTDSDGRLHVIIRSKFKGPANATTKRIKQALQKVASKF 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05390 599 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 460 IPR036638 GO:0046983
Trre8g05390 599 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 183 IPR025610 -
Trre8g05390 599 PANTHER TRANSCRIPTION FACTOR TT8 3 597 - -
Trre8g05390 599 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 396 445 IPR011598 GO:0046983
Trre8g05390 599 Gene3D - 397 472 IPR036638 GO:0046983
Trre8g05390 599 Coils Coil 435 462 - -
Trre8g05390 599 SMART finulus 402 451 IPR011598 GO:0046983
Trre8g05390 599 Pfam Helix-loop-helix DNA-binding domain 400 446 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05390 Trre-Chr8 55810179 55813858 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05390 2 596 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 42.770 1.91e-153 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g05390 bHLH-MYC_N 3e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05390 - - mtr:25502049 775.393