Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05389 ATGGTGCAAGAAAATATCATGAAGGAACAACTTGCTTTGGCAGTTAGAAGCATTCAATGGAGTTATATAATTTTCTGGTCTGAATCTCCTAACCAACCTGGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGAAATTAAGACAAGGAAAACAAGTCAAGAAGTGGAGCTTAGTTCTGATGAAATAGGCTTGCAGAGAAGTGAACAACTAAGAGAGCTTTTCAGGACCCTTAAACCTACAGAAACAAGTCCTCCAACAAAAAAGCCTTCTGCAGCACTTTCACCTGATGACCTTACAGATACTGAATGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTCTAGCAAACGACGAACCAATTTGGCTTATGGATGCGTATTCTGTTGATTGCAAAGAGTTTAATCGCTCTCTCCTCGCAAAGAGTGCATCTATTCAGACAGTGGTGTGCTTTCCTTTTATGAAAGGGGTTATTGAGCTAGGCACAACTGATATGGTAATGGAAGATCTCAGTATCATTCAACAGGTCAAAACTTCTTTATCGAATATTCTAAGTGTCGATGACCCTATTAACGTTCAAGCGACATTGAATCCGAGAAATAATGAAGATGTTGCTCATGTAGAATTTGATCATATTGATTACAATGTTGAATTAATTCCAGAAGTTGGTTATGACATAATCAACACAGAAACCTCACCTAATGGAAGTTCAAATGCCTTACAAATCAATCAACTACCGCCAGATGAAACATTCATGGTTGAAAGCTGGCAAATTATGGATGATGATTTGATCCATAACTCCATGAATTCAAGTGATTGCATATCACAAACTATTGCTTCTGTTCCTAGAAGTGGAGAAGATTGCAACAATAACCAAAAAATGACCTCAGTGGATCCACTAAGATACGATTGCCATTATCAGAAAATTCTTTCAGACCTATTGACAAACAATGACCAATTAAGTATGGGAATGCATTTTCAAAACTTTCATCAAGATTCAAGCTTTTGTGCTTGGAACAAAAGAGGGCAAGTGGATTGCCAAAGGCCAAGACAAGGAAACTCACAAAAGCTATTGAAGAAAATGTTGTTAGAAGTTCCGCGGATGCACATGGATGGTTTGGTTGAATCTCAAGAAGAGAATGACTATAGAGAGGGAACAAGACTAGAAGCTGATGAAGGTATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCAAAACTTAATGAAAGGTTTTTAACTCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATATCTTAGCAAGCTTGAGAAAAGGATAAAAGAGTTAGAAGCTCAAAAAGAACCAATAGATATAGAGTCTAGAAGTAAAAAATCACATCATGATTTGTTGGAGAGGACTTGTGATGATTATTATAACAACAAAACTAACAATGGCAAGAAACCAATGATGAAGAAGAGGAAAATATGTGACATAGGTGAGACAAGGAGACAGATATTTTCTGATGCTTTAAAAGGAAGTTCTAATAGTGATGTTACTGTCAGTATGAGTGACAATGGAGTTGTGATTGAAATGAAGTGTCCTTCTAGAGAAGGAAGGATATTGGAAATTATGGATGCAGTTAACAATCTCAACATGGATTTTAATTCAGTTCAATCTACAGATTCCGATGGGAGGCTTCATGTGATCATTAGATCTAAGTTCAAAGGACCAGCTAATGCAACAACAAAAAGGATCAAACAAGCCCTACAAAAAGTGGCTTCAAAGTTTTGA 1815 0.3708 MVQENIMKEQLALAVRSIQWSYIIFWSESPNQPGVLSWGEGYYNGEIKTRKTSQEVELSSDEIGLQRSEQLRELFRTLKPTETSPPTKKPSAALSPDDLTDTEWYYLVCMSFVFNIGQGLPGRALANDEPIWLMDAYSVDCKEFNRSLLAKSASIQTVVCFPFMKGVIELGTTDMVMEDLSIIQQVKTSLSNILSVDDPINVQATLNPRNNEDVAHVEFDHIDYNVELIPEVGYDIINTETSPNGSSNALQINQLPPDETFMVESWQIMDDDLIHNSMNSSDCISQTIASVPRSGEDCNNNQKMTSVDPLRYDCHYQKILSDLLTNNDQLSMGMHFQNFHQDSSFCAWNKRGQVDCQRPRQGNSQKLLKKMLLEVPRMHMDGLVESQEENDYREGTRLEADEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLSKLEKRIKELEAQKEPIDIESRSKKSHHDLLERTCDDYYNNKTNNGKKPMMKKRKICDIGETRRQIFSDALKGSSNSDVTVSMSDNGVVIEMKCPSREGRILEIMDAVNNLNMDFNSVQSTDSDGRLHVIIRSKFKGPANATTKRIKQALQKVASKF 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05389 604 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 188 IPR025610 -
Trre8g05389 604 Coils Coil 440 467 - -
Trre8g05389 604 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 401 450 IPR011598 GO:0046983
Trre8g05389 604 PANTHER TRANSCRIPTION FACTOR TT8 3 602 - -
Trre8g05389 604 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 404 465 IPR036638 GO:0046983
Trre8g05389 604 Pfam Helix-loop-helix DNA-binding domain 405 451 IPR011598 GO:0046983
Trre8g05389 604 Gene3D - 402 477 IPR036638 GO:0046983
Trre8g05389 604 SMART finulus 407 456 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05389 Trre-Chr8 55810179 55813858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05389 2 601 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 43.075 8.82e-158 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g05389 bHLH-MYC_N 8.7e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05389 - - mtr:25502049 789.645