Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05383 ATGTCTGGATGCAATAAATCACCTAAAAATGATCAACATTCGATTAAATATCGGTGGATTCAACACGGAGGGGCATCCTCTAAGGCTGCTGATATTTCTCGTGTAGATTGTTCGCCTCCTCTTTCCAATAATGAGAACAAACAATGCTATAGAAGTTCTCAACTGAATCCCCCTGAGATACTCACCACGCCGCAGCTCATCTCTGCAATAGGCCAGTTATGGGATTCTGCTAGTCGTCCACTTTCATTTTTACTCCCGAAGGAAAATGTGAATAAAGATGATAAAGGATTCTCAAAAGAGAAAATTTTGGGTAACATTCATGAGAGTAAAAATGGTGTGGTTACTTCAAATAACACTAATTACTATTCTGTTAATCCGAGTGATACTTGCTTCAATTCACAAATTGTGCAGGAAAAATTGGATTTCCCTAAGGTAACGCAGAAGATGTTAATACTTGAATCTTCTTGTGGAAGTCAAGATTATATACATTCTTTATTCCATAGATTTTCGCAGGCAAGCGATAAAAATTCAAATGAATATTGTGATAAACTTGAACTTGGGAGTGAAGAAATTTCGTTTAGATCAGGAAATGTTCCTAGTGAGCTAAACTGTCGTGCAAAGGTTACTGTGCCTGAGAACCTGAAAACTAATTCTTTGGTTGCCAGGGACTGCATTTCAATAGACGCAGTCCCCACTTCATTGGCTAATGAAAGAGATGTATGCAATCCTGATGTACTCGTCCGTGAAGCTCCGGCATTATCTAACGGTGCAGTTTTGAACACAAAAGAAGTTAACCCTCTGTGTTCAGACTATTTTCTTCAAATTGTGCCTGATAATCAGATGGATGTTGATGCTTGTCAAACCCTATCTTCTAGTATCTATGCAGACTATCATATTATCAACTCTTTAGCTACCTGTAACACTGCTTCTGTGCAGTGCCAAAGTAAGCTTGATGATAATGAATTAATGGAAATTCAAAAAAGCCATTTATCACATATAACCGATGATGAACCTAAGCTTCAGATCTTCTCTGCAACTAATCGGAAGCCTTCCCATTCCCTAGCCAAGCAAGAACATGCTTTTTCTGGGGCATTGGCTGGAATATGTGTCAGCTGTTGTCTGCATCCTGTTGACACAATCAAGACAGTCGTTCAATCATGTCGTGCAGAACAGAGGTCCATCTTTTACATTGGCAAATCAATTGTTTCCGATAGAGGTTTTCCTGGACTATATCGTGGAATTACTACAAACATTGCATGTTCGGCTCCAATTTCTGCAGTTTATACTTTCACGTATGAATCGGTTAAAGCAGCTTTGCTTCCTTATCTTCCAAAGGAGAATTATTCTTTTGCCCATTGTGTGGGAGGTGGTTGTGCAAGCATTGCCACGTCTTTCATCTTCACTCCTAGTGAGCGAATAAAGCAGCAGATGCAAGTTGGATCTCATTATCGCAACTGCTGGGATGTATTGATCGGAATTATCAGAAATGGTGGTCTATCCTCACTATATGCAGGTTGGAGAGCTGTACTATGCCGAAATATCCCACATTCAATGATCAAGTTTTACACATATGAAAGCTTGAAGCAAGTGATGCCATCTTCTAGTATTCAATCCCACACATTTCAGACCTTAGTGTGTGGAGGATTGGCTGGATCAACTGCTGCTTTATTCACAACTCCGTTTGATGTGATCAAGACAAGATTACAGACACAGATTCCTGGATCAAGAAATCAATATGATAGTGTGTTCCATGCCCTTTACAAAATTAGCAAGACCGAAGGTTTGAAGGGGTTATACAGGGGGTTGACTCCAAGGTTGATTATGTACATGTCTCAAGGATCATTGTTCTTTGCTTCATACGAATTTTTCAAGAGTGTATTCTCTCTGGAAGCATCACTTCCCACTGGTTTATAA 1914 0.396 MSGCNKSPKNDQHSIKYRWIQHGGASSKAADISRVDCSPPLSNNENKQCYRSSQLNPPEILTTPQLISAIGQLWDSASRPLSFLLPKENVNKDDKGFSKEKILGNIHESKNGVVTSNNTNYYSVNPSDTCFNSQIVQEKLDFPKVTQKMLILESSCGSQDYIHSLFHRFSQASDKNSNEYCDKLELGSEEISFRSGNVPSELNCRAKVTVPENLKTNSLVARDCISIDAVPTSLANERDVCNPDVLVREAPALSNGAVLNTKEVNPLCSDYFLQIVPDNQMDVDACQTLSSSIYADYHIINSLATCNTASVQCQSKLDDNELMEIQKSHLSHITDDEPKLQIFSATNRKPSHSLAKQEHAFSGALAGICVSCCLHPVDTIKTVVQSCRAEQRSIFYIGKSIVSDRGFPGLYRGITTNIACSAPISAVYTFTYESVKAALLPYLPKENYSFAHCVGGGCASIATSFIFTPSERIKQQMQVGSHYRNCWDVLIGIIRNGGLSSLYAGWRAVLCRNIPHSMIKFYTYESLKQVMPSSSIQSHTFQTLVCGGLAGSTAALFTTPFDVIKTRLQTQIPGSRNQYDSVFHALYKISKTEGLKGLYRGLTPRLIMYMSQGSLFFASYEFFKSVFSLEASLPTGL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05383 637 ProSiteProfiles Solute carrier (Solcar) repeat profile. 447 530 IPR018108 -
Trre8g05383 637 Gene3D Mitochondrial carrier domain 328 448 IPR023395 -
Trre8g05383 637 Gene3D Mitochondrial carrier domain 449 636 IPR023395 -
Trre8g05383 637 ProSiteProfiles Solute carrier (Solcar) repeat profile. 538 626 IPR018108 -
Trre8g05383 637 FunFam Mitochondrial substrate carrier protein-like 332 480 - -
Trre8g05383 637 Pfam Mitochondrial carrier protein 449 532 IPR018108 -
Trre8g05383 637 Pfam Mitochondrial carrier protein 539 628 IPR018108 -
Trre8g05383 637 Pfam Mitochondrial carrier protein 358 439 IPR018108 -
Trre8g05383 637 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 326 630 - -
Trre8g05383 637 SUPERFAMILY Mitochondrial carrier 358 623 IPR023395 -
Trre8g05383 637 ProSiteProfiles Solute carrier (Solcar) repeat profile. 354 438 IPR018108 -
Trre8g05383 637 FunFam Mitochondrial substrate carrier protein-like 481 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05383 Trre-Chr8 55768867 55776786 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05383 337 627 Chloroplast and Mitochondria Gene Families AT1G07030 33.660 3.69e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05383 - - pvu:PHAVU_002G289600g 887.871