Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05375 ATGGGTTGTAAGTTTTCCAAGTACTCAACATGCTGCTGTAGTACTGAGCAAGGTGATGTTCAGGTTCCTGAGGCTAACATTGAGGAAAATGTAGAGAATAATGTTGAGGGTGATGGCTTGCCTTCGTTTCGTGAATATACTGTTGATCAGCTTAGGAAGGCCACCTCTGGATTTGCAGTAGAAAATATAGTTTCTGAGCATGGAGAAAAGGCTCCAAATGTTGTCTATAAAGGGAAACTTGAAAACCAAATGCGAATTGCCATCAAACGGTTCAACAAATCAGCTTGGCCAGATGCCCATCAATTTTTGGAAGAGGCCAGAGCTGTTGGTCAGCTAAGGAGCCAAAGATTGGCAAATCTGCTTGGATGCTGCTATGAAGGTGATGAAAGGCTGCTTGTATCCGAATACATGTCCAATGATACTTTGGCTAAGCACCTGTTCCATTGGGAAACTCAGCCAATGAAATGGGCAATGCGACTCAGAGTTGCTTTACACCTTGGCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCTCTGTATCATGATCTAAATGCTTACAGAGTTCTTTTTGATGATGACTTCAATCCTAAACTTTCATGCTTTGGTTTGATGAAAAACAGTCGAGATGGGAAAAGTTATAGTACAAATTTGGCATTTACGCCACCTGAGTATCTCAGGACAGGTAGAGTTACTCCAGAGAGCGTAACTTATAGTTTTGGCACCCTTTTACTCGACCTTCTCAGCGGAAAACACATTCCCCCAAGCCATGCCCTTGACCTGATCAGGGACAGGAACCTTCAGAGTCTAACAGACTCGTGTTTAGAAGGACAATTTTCAGATGATGAGGGGACTGAATTGGTTCGTCTAGCTTCACGATGCTTACAATCTGAACCGCGAGAGCGTCCTAATCCAAAGTCACTGGTCACTGCTCTAATACCTCTACAGAAAGATCCTGAGGTTCCTTCTCATGTGCTGATGGGTACTGATGGTAGTGATGCTTTCCCCCTTACTCCGCTTGGGGAAGCTTGTCTGCGCATGGACCTGACTTCCCTACATGAGGTGCTGGAGAAAATTGGGTATAAAGATGACGAGGGTGCAGCTACAGAGCTTTCATTCCAAATGTGGACCAACCAGATGCAGCAAACATTGGACTCGAAGAAGAAGGGAGATTCTGCTTTTCGGCAGAAGGACTTTAAAACTGCAATTGAAGGCTACACGCAGTTTATTGATGTTGGAAGCATGGTTTCGCCAACAATTTATGCGCGTCGTAGTCTGTCTTATCTTTTCAGCAGTATGCCAAACGAAGGACTCGGTGATGCAATGCAGGCACAAATGATATCTCCTGTTTGGTTCATGGCATTTTATTTACAAGCTATTGCTCTTTTGGCGCTGGGAAAGGAGAGTGATGCACAAGTGGCACTTAAAGAGGGTACTGAACTTGAAACTAAAAAGAGCACAAATTGA 1467 0.4424 MGCKFSKYSTCCCSTEQGDVQVPEANIEENVENNVEGDGLPSFREYTVDQLRKATSGFAVENIVSEHGEKAPNVVYKGKLENQMRIAIKRFNKSAWPDAHQFLEEARAVGQLRSQRLANLLGCCYEGDERLLVSEYMSNDTLAKHLFHWETQPMKWAMRLRVALHLGQALEYCTSKGRALYHDLNAYRVLFDDDFNPKLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQSLTDSCLEGQFSDDEGTELVRLASRCLQSEPRERPNPKSLVTALIPLQKDPEVPSHVLMGTDGSDAFPLTPLGEACLRMDLTSLHEVLEKIGYKDDEGAATELSFQMWTNQMQQTLDSKKKGDSAFRQKDFKTAIEGYTQFIDVGSMVSPTIYARRSLSYLFSSMPNEGLGDAMQAQMISPVWFMAFYLQAIALLALGKESDAQVALKEGTELETKKSTN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05375 488 SUPERFAMILY TPR-like 385 484 IPR011990 GO:0005515
Trre8g05375 488 Gene3D Transferase(Phosphotransferase) domain 1 138 329 - -
Trre8g05375 488 FunFam probable serine/threonine-protein kinase At4g35230 33 136 - -
Trre8g05375 488 Gene3D Phosphorylase Kinase; domain 1 33 136 - -
Trre8g05375 488 FunFam probable serine/threonine-protein kinase At4g35230 381 488 - -
Trre8g05375 488 Pfam Protein tyrosine and serine/threonine kinase 74 311 IPR001245 GO:0004672|GO:0006468
Trre8g05375 488 SUPERFAMILY Protein kinase-like (PK-like) 41 322 IPR011009 -
Trre8g05375 488 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 24 486 IPR045845 GO:0004672|GO:0009742
Trre8g05375 488 FunFam probable serine/threonine-protein kinase At5g41260 138 329 - -
Trre8g05375 488 Gene3D Tetratricopeptide repeat domain 380 488 IPR011990 GO:0005515
Trre8g05375 488 ProSiteProfiles Protein kinase domain profile. 61 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05375 Trre-Chr8 55712619 55717435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05375 28 323 Glycoside Hydrolase AT3G07070 33.631 9.41e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Trre8g05375 PK_Tyr_Ser-Thr 1.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05375 K14500 - gmx:100797107 820.846