Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05372 ATGGATAGTAGAGAGGCTATGTCATTCTCTGGTGTCCCTGGTTCATATTACATGCATAGAGGAGGGGTTGATGTTGCAGGGTCTGGTGGCTCTGGAGGGTTCCAAGTACCTCCTGGATTCAGAGCTATGCCAAATACTGGCATTATAGCTCAGCCAAATGTTAGGGGTCAAGGTGGTAATGTTGACTCTAGTTCAACATTTTCATTGGAGACTCAGTCTCATCACTCTCATGCCAATTTTAATCATGGCATTAATATTGGTGCATCTTCTGGGGGACCTTCTAGTGAGCCTGTGAAAAAGAAACGAGGGAGACCGCGGAAATACGGTCCTGATGGAACAGTTTCTTTGAAACTGTCTCCAATGTCTGCCCCTGCTAATTCTACTCAGGGTTCATCCACACCTTCTGAGAAACGGGGTAGAGGTCGCCCTCGTGGATCTGGAAGGAAGCAACAGCTGGCTACATTAGGTGACTGGATGACCAGTTCAGCAGGGTTGGCTTTCTCGCCTCATGTTATCACCATTGGAGCTGGGGAGGACATTGCAGCAAAGCTATTGGCGTTATCACAGCAGAGACCAAGGGCTCTGTGCATCTTGTCGGGAACTGGGATAGTTTCTTCAGTTACTCTGCGACAACCTGCCTCTACCAATGCCGGTGTATCTTATGAGGGAAAATTCCAAATATTAAGCTTGTCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCATCCAGTAGAACGGGTGGCGTAAGTGTTTCTCTTTCTAGCCGTGATGGTCATGTTATTGGTGGCGGTGTTGCTGCTCTTATTGCCGGAAGCCCAATACAGGTGGTGGTGTGCAGTTTTGTATACGGCGGTAGCTCAAAGGTAAAGACTATTAAGCAAGGAGACGCTACCACCAATGGTGAAAATTCAGAGGCTCACAATGATAAGCTAGCTTCTCCGACCAGTGCTCCACCTAGTCAAAACTACATCTCTTCTCCAACAGGCATGTGGCCCAGACCACAGCCATCAGACGTGAAAAGCGCGCACACACATACTGGCTTTGACTTGACAAGAGGATGA 1062 0.4812 MDSREAMSFSGVPGSYYMHRGGVDVAGSGGSGGFQVPPGFRAMPNTGIIAQPNVRGQGGNVDSSSTFSLETQSHHSHANFNHGINIGASSGGPSSEPVKKKRGRPRKYGPDGTVSLKLSPMSAPANSTQGSSTPSEKRGRGRPRGSGRKQQLATLGDWMTSSAGLAFSPHVITIGAGEDIAAKLLALSQQRPRALCILSGTGIVSSVTLRQPASTNAGVSYEGKFQILSLSGSYLVAEDGGPSSRTGGVSVSLSSRDGHVIGGGVAALIAGSPIQVVVCSFVYGGSSKVKTIKQGDATTNGENSEAHNDKLASPTSAPPSQNYISSPTGMWPRPQPSDVKSAHTHTGFDLTRG 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05372 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 72 319 IPR039605 GO:0003680
Trre8g05372 353 MobiDBLite consensus disorder prediction 119 136 - -
Trre8g05372 353 ProSiteProfiles PPC domain profile profile. 161 302 IPR005175 -
Trre8g05372 353 MobiDBLite consensus disorder prediction 54 92 - -
Trre8g05372 353 Gene3D - 169 299 - -
Trre8g05372 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 282 IPR005175 -
Trre8g05372 353 MobiDBLite consensus disorder prediction 54 151 - -
Trre8g05372 353 MobiDBLite consensus disorder prediction 296 353 - -
Trre8g05372 353 CDD DUF296 169 281 IPR005175 -
Trre8g05372 353 MobiDBLite consensus disorder prediction 296 332 - -
Trre8g05372 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05372 Trre-Chr8 55690701 55693644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05372 1 353 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 46.649 3.04e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05372 - - gmx:100813888 436.417