Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05359 ATGAAGTTGTTTTGTACTTCATTGTTGTTTTTGGGTTTGGTTTCTATGCTCTCTTTTGTAGCTTCTGGTTTGGTGGCATCAAATGAAGTTTCGGCGCTTACGGCCTTCAAAGAAGCTGTGACTGATGATCCACATATGGTTTTGTCCAATTGGAATACTTTGGATTCAGATCCTTGTGACTGGAATGGAGTTTCATGCACCGGGACTCGAGATCATGTCATCAAGCTAAATGTATCAGGGGCATTACTAAGAGGGTTTCTTGCACCAGAAATTGGGAAAATAACCTACTTACAAGAACTAATCCTGCATGGTAACAATCTCATTGGAATAATACCGAAAGAATTGAGCGCCTTAAAATCGCTTAAGGTGTTGGATTTGGGAAAGAATCAATTATCAGGACCAATTCCTCCAGAGATTGGAAATTTGACTGAAATCGTAAAAATAAATATGCAGTCCAATGGTTTGACTGGTAGGTTACCTCCAGAGCTTGCAAATTTGAAATACCTTCAAGAACTTCGGTTAGATAGGAATAAGCTCGAAGGGTCTATTCCTGCTACTAGCACTTCAAATTTTCCATCAAATATGCATCAAATGTATGCCTCAAATGCGAAATCGACTGGCTTCTGTCGTTTGTCACTTAAAATTGCAGATTTTTCATATAACTTTTTGGTTGGTAGCGTACCGAAATGCTTGGAGTATCTTCCAAGAACTAGCTTTCAAGGGAATTGCCTCCGCGTCAAAGACATAAAACAGCGGACTAAAGTTCAATCTGGAGCTTCTCCTGCTCAGGGCCATCCAGTAGTGAAACCAAAGCACCATTCTAAAGCTGTACATGTATCAAAGCATGAAGGAGGCTCAAAGCCTGCTTGGCTTTTGGCTCTAGAAATAGCGACCGGAACCATGGTTGGTGCTCTCTTTCTGATTGGTATGATCACTGCTATCCAAAGGTGTAACAACAAATCATCCATCATTATTCCTTGGAAGAAATCTGCAAGCGAGAAAGAGCAAATTGCAGTATATATAGACTCTGAGATGTTGAAAGATGTGACGAGGTATAGCAGACAAGATCTTGAGGTGGCTTGCGAAGACTTCAGCAACATAATCGGATCCTCACCGGATAGTGTGGTCTACAAAGGTACAATGAAAGGTGGACCTGAGATTGCTGCAATTTCCCTCTGCATCAAGGAAGAGAATTGGACTGGACACCTTGAACTTTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGAATAAATCATGAGAATACAGGAAAGCTACTAGGCTATTGTAGAGAGAGCAGTCCATTTACAAGGATGCTGGTTTTTGATTATGCATCAAATGGCACACTTTATGAACACCTGCATTGTTATGAAGAAGGGTTCCAGTTATCTTGGACGCGGCGCATGAAAATTATTATAGGCATTGCACGGGGACTAAAGTATTTGCACACTGAAATTGAACCTCCATTCACTATCTCAGAGTTGAATTCCAACGCTATATACCTTACAGAAGATTTTTCCCCCAAGCTGGTTGATTTTGAAAGTTGGAAGACGATTCTTGAAAGATCAGAAAAAAATTCTGGTTCCGTTAGCAGCCAAGGCGCCGTTTGTACTCTTCCAAACTCACTTCAAGCACGTTATCTTGATACCAAAGGAAATATTTATGCTTTTGCAGTACTTGTACTTGAGATTATCAGTGGGAGATCTCCATACTGCAAGGACAAAGGGTACTTAATGGATTGGGCTAGGGATTATCTTGAATTGCCAGAAGTAATGTCAAATTTGGTGGATCCTGAGTTGAAACATTTTGGATCTGATGATCTCAAAGTATTATGTGAGGTGATAACACTTTGTATTAGTCCTGAACCTGATGTATCTCCATCAATGAGAGAATTATGCAGCATGCTGGAGAGCAGAATCGACACATCAATAAGTGTGGAGCTCAAATCCTTAGCTTGGGCTGAACTAGCACTTTCATCATAA 1980 0.4066 MKLFCTSLLFLGLVSMLSFVASGLVASNEVSALTAFKEAVTDDPHMVLSNWNTLDSDPCDWNGVSCTGTRDHVIKLNVSGALLRGFLAPEIGKITYLQELILHGNNLIGIIPKELSALKSLKVLDLGKNQLSGPIPPEIGNLTEIVKINMQSNGLTGRLPPELANLKYLQELRLDRNKLEGSIPATSTSNFPSNMHQMYASNAKSTGFCRLSLKIADFSYNFLVGSVPKCLEYLPRTSFQGNCLRVKDIKQRTKVQSGASPAQGHPVVKPKHHSKAVHVSKHEGGSKPAWLLALEIATGTMVGALFLIGMITAIQRCNNKSSIIIPWKKSASEKEQIAVYIDSEMLKDVTRYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAAISLCIKEENWTGHLELYFQREVADLARINHENTGKLLGYCRESSPFTRMLVFDYASNGTLYEHLHCYEEGFQLSWTRRMKIIIGIARGLKYLHTEIEPPFTISELNSNAIYLTEDFSPKLVDFESWKTILERSEKNSGSVSSQGAVCTLPNSLQARYLDTKGNIYAFAVLVLEIISGRSPYCKDKGYLMDWARDYLELPEVMSNLVDPELKHFGSDDLKVLCEVITLCISPEPDVSPSMRELCSMLESRIDTSISVELKSLAWAELALSS 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05359 659 Gene3D Transferase(Phosphotransferase) domain 1 444 649 - -
Trre8g05359 659 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Trre8g05359 659 Pfam Protein tyrosine and serine/threonine kinase 365 633 IPR001245 GO:0004672|GO:0006468
Trre8g05359 659 FunFam Inactive receptor-like serine/threonine-protein kinase 336 443 - -
Trre8g05359 659 PANTHER PROTEIN MALE DISCOVERER 2 13 657 - -
Trre8g05359 659 SUPERFAMILY L domain-like 28 235 - -
Trre8g05359 659 Gene3D Ribonuclease Inhibitor 24 257 IPR032675 -
Trre8g05359 659 SUPERFAMILY Protein kinase-like (PK-like) 343 636 IPR011009 -
Trre8g05359 659 ProSiteProfiles Protein kinase domain profile. 362 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05359 659 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Trre8g05359 659 MobiDBLite consensus disorder prediction 254 282 - -
Trre8g05359 659 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 26 189 - -
Trre8g05359 659 Gene3D Phosphorylase Kinase; domain 1 334 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05359 Trre-Chr8 55641997 55645664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05359 1 641 Receptor kinase-like Gene Family AT2G35620 28.983 4.33e-57 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Trre8g05359 PK_Tyr_Ser-Thr 1.7e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05359 - - gmx:100781978 1073.54