Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05350 ATGACAAGTGATTATTCTACAACATCGTACATGGATCAGCTGGTGACCCAAAGTAATGTTGAAAAGCCAATGTGGCTTGATGATTTTCTGAAGGAAAGTTTCTTTGAATCATGTTCTACTCACCCGTTGCGCAAGAATGAGTTAAAGAAGTATTGTATAGACTGCAATATGTTAATCTGTCAACATTGTGTATCTTCTGGTCTTCATCGCCACCATAAGGTTTTGAAGGTACATAGATATCGTTGCAAGCAAGTTATCTGCCTGCGTGCTATAGAAAAATACATCGACTGTTCGCAAATTCAGATCCATAAAAGGAACAGGCGACCGGTTATTTCTCTGAATCCTCTCCAATTCGATGAGTTAGGATTAAATGATCAAGAATCGTGCCAAGTTTGCAACAGAAGGCTGAATATACCTGAGTTATATCGTTACTGCTCGATTTATTGCAAGGTCGAATCGGTTTCGAAAAAGTCCGAGCTTGAGAATCCAGTTAGCACAACACCAGTTGAGTCTTCCTCAGTACCTTCCATCCAGAGCCCTCCTCCTCCTCCACCTCCTCAGGGGACACTAGAGGGCACCTCTGTATTTTCATTCCGAAAAAGGAAACGAAAGGGAATCCCCCAGAGAGCTCCCTTCTATTGA 642 0.4221 MTSDYSTTSYMDQLVTQSNVEKPMWLDDFLKESFFESCSTHPLRKNELKKYCIDCNMLICQHCVSSGLHRHHKVLKVHRYRCKQVICLRAIEKYIDCSQIQIHKRNRRPVISLNPLQFDELGLNDQESCQVCNRRLNIPELYRYCSIYCKVESVSKKSELENPVSTTPVESSSVPSIQSPPPPPPPQGTLEGTSVFSFRKRKRKGIPQRAPFY 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05350 213 Pfam PLATZ transcription factor 79 151 IPR006734 -
Trre8g05350 213 MobiDBLite consensus disorder prediction 160 174 - -
Trre8g05350 213 Gene3D Classic Zinc Finger 37 81 - -
Trre8g05350 213 MobiDBLite consensus disorder prediction 160 213 - -
Trre8g05350 213 SUPERFAMILY B-box zinc-binding domain 37 88 - -
Trre8g05350 213 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 19 212 - -
Trre8g05350 213 CDD Bbox2 38 77 - -
Trre8g05350 213 ProSiteProfiles Zinc finger B-box type profile. 38 77 IPR000315 GO:0008270
Trre8g05350 213 MobiDBLite consensus disorder prediction 175 189 - -
Trre8g05350 213 Pfam B-box zinc finger 38 76 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05350 Trre-Chr8 55520772 55522595 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre8g05350 PLATZ 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05350 - - tpra:123915973 313.923