Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre8g05349 | ATGTCTTTCAGCGGAACCCAACAGAAATGCAAGTCTTGTGATAAAACTGTTCACTTGGTTGATTCAATATCTGCTGATGGTAATGTTTATCACAAGAACTGCTTCAGATGTAGCCAATGCAATGGCCTTCTTGCGATGAGCACCTATTCATCAATGGAAGGAGTTTTGTACTGTAAGACTCATGCTGAGCAGGTTGCCAAGGAGTCTGGCAGTTTTGCCGCCAAGAGATCCCTGTCAGCGGGAAGGCCCAGCGAGCTGCCTAGGGCCCCGAGCAAGCTTTCTGCTTTCTTCTCAGGGACTCAAGAAAAATGTTCAGCATGCAAGAAAACCGTATATCCATTGGAAAAGTTGACAGTGGAAGGTGAATTTTATCACAAATCATGCTTTAGGTGTACACATGGAGGATGTTTTCTCAGCCCTTCATCCTATGCTGCACTTGATGGATTTATATACTGCAAGCCTCACTTTTCTCAGTTGTTTAAGGCTAAAGGTAGTTATAGCTATCTCTCCAAACAAGCTTCAATGAAGAAAAGTGAAGAAATGCAACAGGCTGCGGAGCAGAAAACTGATGATTCAGCAGCAGAACCAGCACCAGCGGCAGACGACACAGAGACGAAGGAAGAACAAGATCCTGCTGTTGAGACGCAAGAGGCGTAG | 657 | 0.4521 | MSFSGTQQKCKSCDKTVHLVDSISADGNVYHKNCFRCSQCNGLLAMSTYSSMEGVLYCKTHAEQVAKESGSFAAKRSLSAGRPSELPRAPSKLSAFFSGTQEKCSACKKTVYPLEKLTVEGEFYHKSCFRCTHGGCFLSPSSYAALDGFIYCKPHFSQLFKAKGSYSYLSKQASMKKSEEMQQAAEQKTDDSAAEPAPAADDTETKEEQDPAVETQEA | 218 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre8g05349 | 218 | SMART | lim_4 | 103 | 155 | IPR001781 | - | |
| Trre8g05349 | 218 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Trre8g05349 | 218 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Trre8g05349 | 218 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 130 | 168 | - | - | |
| Trre8g05349 | 218 | PANTHER | OS06G0237300 PROTEIN | 99 | 216 | - | - | |
| Trre8g05349 | 218 | ProSiteProfiles | LIM domain profile. | 102 | 162 | IPR001781 | - | |
| Trre8g05349 | 218 | MobiDBLite | consensus disorder prediction | 177 | 218 | - | - | |
| Trre8g05349 | 218 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 72 | - | - | |
| Trre8g05349 | 218 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Trre8g05349 | 218 | MobiDBLite | consensus disorder prediction | 200 | 218 | - | - | |
| Trre8g05349 | 218 | FunFam | LIM domain and actin-binding 1 | 98 | 168 | - | - | |
| Trre8g05349 | 218 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Trre8g05349 | 218 | Gene3D | Cysteine Rich Protein | 2 | 71 | - | - | |
| Trre8g05349 | 218 | Pfam | LIM domain | 104 | 159 | IPR001781 | - | |
| Trre8g05349 | 218 | Pfam | LIM domain | 10 | 61 | IPR001781 | - | |
| Trre8g05349 | 218 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 96 | 129 | - | - | |
| Trre8g05349 | 218 | Gene3D | Cysteine Rich Protein | 98 | 168 | - | - | |
| Trre8g05349 | 218 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre8g05349 | Trre-Chr8 | 55517696 | 55519314 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Trre8g05349 | LIM | 6.7e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre8g05349 | - | K24413 | tpra:123915974 | 398.667 |