Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05345 ATGTGGGGATGGTTGATTAGAGAAGGCCGAAAAGCATCATCATCATCACCATGGAACCTAAACCTCATCCGTAACATGGGTGGCGGTCCTCGTACTTTTCCTGGCGGCGTAAGTAAATGGAAATGGAAACGAATGCACGAAAAACGCGCCAAAGATAAACAGAAAAACCTTCTCGAACAAGAGAAACAACTCTATCAAGCACGCATTCGATCTCAAATACGTTCCACTCTCTCACCTTCTTCATCTTCTTCTTCCTCCACTCATAACCCTATTTCCCCTCATCAACACATCAAATCCCTCGCCGATCGTTTCATGAAAGATGGTGCTCAAGATCTCTGGAACGACTCCGACGGCCCATTAACCCCAATTGAAGTCCAACCCCAGGCCCAAACATCGCCGCAACTTGATTTGCGCAAACTCGCAAATCAACCTTCAAATCAGAATTTGCATAATTTTTCACAAATTAGGGGTTTCCGTTCTGTTCCCGATGTTAGGGATTTGAGTGATAGGAAGCGTGTTGGAACGGAAAAGAGAAGAATTTGGAGAAAGAATGATTCTTCTAGTGACAGTGAGAGTGAGAATGAAGTTGAATCTCAGAATCAGGGTTATTATTCTAATGTGGGTAGTATTGCTTCTTTGGGTAAACATGATGTGAAGAGGGAGAGGAGAGTCATGCCTAAGAAACTCGACGATGGAACTGATTTTTCGGAGCAGGTTCAGTTAATTAAGTATGAGATTCATAAGAAGAAGTTGATTCAGAATGGGAATAATCAGGGTGAAGAACAGGAAAACATTCTTAGTCAGACAAGGTTTGACGAGTGTGCTATATCACCATTGACAATCAAAGCACTTTCTTCATCTGGTTACATTCATATGACCCGGGTTCAAGAGATCAGCCTTCCTGTTTGCCTTGAGGGTGTGGATGTTATGGTCAAGGCTAAAACTGGCACCGGAAAAACTGCAGCTTTTTTGCTTCCTGCTATTGAAACAGTTTTGAAAGCTATGAGTAGCAATACCTCTCATCGTGCACCGCCAATATATGTTCTTATTCTATGCCCTACCAGAGAACTTGCTAGCCAACTTGCTGCTGAAGCAACGGTTTTACTGAAATATCATGATGGCATTGGAGTGCAGACTCTAGTTGGAGGCATACGATTTAAAGTTGACCAAAAACGCCTTGAATCAGAGCCATGCCAGATGCTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTGTACGATTGATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTTGGATTTCGAAAGGATATAGAAAAAATTGTTGATTGTTTGCCCCGGCAAAGGCAATCTTTGCTGTTTTCTGCAACCATGCCAAAGGAGGTCCGTCGAATATCTCAGGTTGTTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATGGGCTGTGTGGAAACTCCTGTTGAGGTAAAGCAATCCTATCTTATCGCTCCACATGAATCACACTTTCAGATAGTGCATCATATTTTGAAAGACCATATCTCGCAAACACCTGATTATAAGGTTATTGTTTTCTGTATAACTGCGATGGTGACATCACTCACGTATCACCTTCTTCGGGATATGAAACTGAACGTTAGGGAGATACATTCTCGGAAACCTCAGCTGTATCGAACCCGCATATCAGATGAGTTTAAAGAATCCAAACAAATGATTCTTGTCACCTCCGATGTTGGAATAAGTTATCCTGATGTCACATTACTCATACAGGTGGGAATTCCTTCAGACCGTGAACAATATATACATCGTCTAGGAAGAACAGGACAGGAAGGCAAAGAAGGAAAAGGCATATTGTTGATTGCACCATGGGAAGAGTATTTTATAAATGAGATCAAGGATCTCCCTCTAGAGAAATCCCCCTTGCCAGATTTAGATCCACAGGCACAGCTTAAGATTGGGCAATCAATGGCTAAGATTGATAATGACATCAAAGAAGCAGCTTATCATGCTTGGCTTGGTTATTACAACTCCATCATGGAGATTGGGAGGGAGAAGACCACAGTAGCTGAGCTGGCAAACCGGTTTTCTGAATCAATTGGTTTAGAAAGGCCGCCTTCTCTCTTCCGAAAAACTGCACTGAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGCAGATAG 2208 0.4226 MWGWLIREGRKASSSSPWNLNLIRNMGGGPRTFPGGVSKWKWKRMHEKRAKDKQKNLLEQEKQLYQARIRSQIRSTLSPSSSSSSSTHNPISPHQHIKSLADRFMKDGAQDLWNDSDGPLTPIEVQPQAQTSPQLDLRKLANQPSNQNLHNFSQIRGFRSVPDVRDLSDRKRVGTEKRRIWRKNDSSSDSESENEVESQNQGYYSNVGSIASLGKHDVKRERRVMPKKLDDGTDFSEQVQLIKYEIHKKKLIQNGNNQGEEQENILSQTRFDECAISPLTIKALSSSGYIHMTRVQEISLPVCLEGVDVMVKAKTGTGKTAAFLLPAIETVLKAMSSNTSHRAPPIYVLILCPTRELASQLAAEATVLLKYHDGIGVQTLVGGIRFKVDQKRLESEPCQMLVATPGRLLDHIENKSGISVRLMGLQMLVLDEADHLLDLGFRKDIEKIVDCLPRQRQSLLFSATMPKEVRRISQVVLKREHKYVDTVGMGCVETPVEVKQSYLIAPHESHFQIVHHILKDHISQTPDYKVIVFCITAMVTSLTYHLLRDMKLNVREIHSRKPQLYRTRISDEFKESKQMILVTSDVGISYPDVTLLIQVGIPSDREQYIHRLGRTGQEGKEGKGILLIAPWEEYFINEIKDLPLEKSPLPDLDPQAQLKIGQSMAKIDNDIKEAAYHAWLGYYNSIMEIGREKTTVAELANRFSESIGLERPPSLFRKTALKMGLKDIPGIRIRR 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05345 735 MobiDBLite consensus disorder prediction 73 94 - -
Trre8g05345 735 Pfam DEAD/DEAH box helicase 293 471 IPR011545 GO:0003676|GO:0005524
Trre8g05345 735 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 300 483 IPR014001 -
Trre8g05345 735 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 517 660 IPR001650 -
Trre8g05345 735 CDD SF2_C_DEAD 498 628 - -
Trre8g05345 735 Gene3D - 493 714 IPR027417 -
Trre8g05345 735 SMART ultradead3 288 499 IPR014001 -
Trre8g05345 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 478 IPR027417 -
Trre8g05345 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 633 IPR027417 -
Trre8g05345 735 Coils Coil 43 68 - -
Trre8g05345 735 MobiDBLite consensus disorder prediction 181 203 - -
Trre8g05345 735 PANTHER RNA HELICASE 218 664 - -
Trre8g05345 735 Gene3D - 236 484 IPR027417 -
Trre8g05345 735 SMART helicmild6 541 619 IPR001650 -
Trre8g05345 735 Pfam Helicase conserved C-terminal domain 518 617 IPR001650 -
Trre8g05345 735 MobiDBLite consensus disorder prediction 109 133 - -
Trre8g05345 735 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 269 297 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05345 Trre-Chr8 55475349 55479137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05345 260 649 Eukaryotic Initiation Factors Gene Family AT3G19760 27.561 3.71e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05345 - - gmx:100808520 1035.79