Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05326 ATGGAGTGGAACAATTTGAAAGCACCATCATGGGATTTAACTGAAATGGATCAAACAACCTTAAACAACATAGAAACAATGGATGTTTCAAAGAGGTTTGGTGATTATAGAACACAAAGGGAATTTTCTGTTGACTTGAAACTTGGACATGTTGGAAATTCTAGTACTGAATCAGTGGTTACAAAGTCAAAAGATGTTGTTGGTGGAGTTTCAACAAAAATGACATCTTCATCATCTTCAGGTTCAGGGTCATCTAAGAGAGCTAGAGCTATTAACAATGGAAATCAGATAGTTTCATGTCTTGTTGATGGTTGTCAAGCTGATCTTAGTAATTGTAGAGATTATCATAGGCGCCATAAGGTTTGTGAACTTCATTCCAAGACTGCACAAGTCACAATTGGTGGACATAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCATTGGAGGAATTTGATGAAGGAAAGAGGAGCTGTAGGAAACGTTTAGATGGACACAACCGACGGAGAAGAAAGCCACAAGCAGAACCTATAACTCGAAGTAGTAGCTTTTTGTCCAATTACCAAGGAACCCAGTTGTTACCCTTCTCAAGCTCACACATATACCCTTCTACTGCTATGGTGAATCCTGCTTGGGGTGGAGGAGATGTTAGGCTCCATAGCCACAACCACAACCAACACCAACCAATGCACCACCATTTAGTCGAAAAACAAGATCTTTTCCTTGGAACATCATCTCCAACAAGCAGCTACAAAGAAAGCAACAGCCACAGGACACAACAACAACAACAACAACAACAACTCCAGAACACAACAGCAGCCACACTCAGCAACAACCAACATCTTCCAACTGGTTTGAGTCAAACATTTCATAGGAACACGACCAACCCATTTTCAGAAAGATGCAAAATGTTCTGTGACAACAACAATAACAACAACAACAATACTTTTTCCTGTGCTCTCTCTCTTCTGTCATCACCAGTACCACCACAGACACATGATCATCCTGAAAATAGATTGAATCCTATGGTGAATACTACTCACTCATCTTTTATGCAACCTTTAGGTTTGAGTTTGCATGATCATAGCTTGGGATCTGTGGACTCTGTTTTGGGTTCAAATGATCAGAATGCTCATTGTTCTTCAATGTATAACTTGGGTTCTAATGATCAATCCCATTCTCATGAGGGGAATCATAATGAAGCTCCTCCATTATTTCCATTTCAATGGGATTAG 1239 0.3995 MEWNNLKAPSWDLTEMDQTTLNNIETMDVSKRFGDYRTQREFSVDLKLGHVGNSSTESVVTKSKDVVGGVSTKMTSSSSSGSGSSKRARAINNGNQIVSCLVDGCQADLSNCRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQAEPITRSSSFLSNYQGTQLLPFSSSHIYPSTAMVNPAWGGGDVRLHSHNHNQHQPMHHHLVEKQDLFLGTSSPTSSYKESNSHRTQQQQQQQQLQNTTAATLSNNQHLPTGLSQTFHRNTTNPFSERCKMFCDNNNNNNNNTFSCALSLLSSPVPPQTHDHPENRLNPMVNTTHSSFMQPLGLSLHDHSLGSVDSVLGSNDQNAHCSSMYNLGSNDQSHSHEGNHNEAPPLFPFQWD 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05326 412 ProSiteProfiles Zinc finger SBP-type profile. 97 174 IPR004333 GO:0003677
Trre8g05326 412 MobiDBLite consensus disorder prediction 164 183 - -
Trre8g05326 412 MobiDBLite consensus disorder prediction 388 412 - -
Trre8g05326 412 SUPERFAMILY SBT domain 98 179 IPR036893 GO:0003677|GO:0005634
Trre8g05326 412 Gene3D - 91 161 IPR036893 GO:0003677|GO:0005634
Trre8g05326 412 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 54 381 IPR044817 GO:0003677
Trre8g05326 412 FunFam Squamosa promoter-binding-like protein 14 91 161 - -
Trre8g05326 412 Pfam SBP domain 100 173 IPR004333 GO:0003677
Trre8g05326 412 MobiDBLite consensus disorder prediction 244 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05326 Trre-Chr8 55345148 55348996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05326 1 277 SBP-box Gene Family AT5G50670 46.316 1.09e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre8g05326 SBP 2.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05326 - - mtr:25502014 606.675