LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g05312	ATGGCAAATAAAATGAATATTAAGTTAGGAGAACCAACTCTTGTTCTTCCTGCAGAGCCAACAAAGAAAGGATTATACTATCTTTCAAACCTTGATCAAAACATAGCATATCCAGTTCGTACAATTTATTGTTACAAGCATTATTCTAAAGGCAATGAAGATGTTACAAAAGTGATTAAGGATTCCTTGTCAAAGATTCTTGTTCACTACTATCCTATGGCTGGAAGGTTAACAATAAGCTCAGAAGGAAAGTTGATAATAGATTGTACTGAAGAAGGTGTTGTGTTTGTTGAAGCTGAAGCAAATTGCATGATGGAGGATTTGGGTGATATGACAAAGCCTAAGAATATTGAAATTCTTAGAAAACTTGTTTATGATATCCCTAATGCAAAAAACTTACTTGAGATACCTCCTCTGCTTATTCAGGTGACAAAGTTCAAATGTGGAGGATTTGTTTTGGGGGTAAATGTAAATCATTGTATGAATGATGGTATAAGTGCTATGCAATTTGTTAACTCTTGGAGTGACATAGCAAGAGGACTAGACTTAAAAATTCTACCATTTCTAGACAGAACAATACTCAAACCACGTAATCCTCCACAAATAGATTTCCCACACCATGAATTTGCTGAAATTGAAGATTTATCAAACACAAACAAATTAATTCATGAGGAAGAAGAAATGGTCTACAAATCCTTCTATTTCAATCAAAACAAACTTGAACTTCTCAAGAAAAAAGCCACAGAAAATGGTATTGTGAATAAGTGCTCAACTTTTGAGGTACTTTCAGCTTTTGTTTGGAGAGCTAGAACTAAAACTTTAAATGTGCATCCAAATCAAGAAATGAAGTTACTTTTTGCTGTTGATGGAAGATCAAAATTTGCTCCACAAATACCAAAAGGGTATTTTGGTAATGCAATTATTTTGTCAAATGTTATGTGTAAAGCAGGTGAATTATTGAAAAATCCATTATCATTTAGTGTGGAAGTGATTAAAAATTCAATTGAGATGGTAACTGATAGTTACATGAGATCTGCTATTGATTACTTTGAAGTTAAGAGAAGTAAACCTTCTTTAACATCAACACTTTTGATTACAACATGGACTAGATTGTCTTTTCATGAAGCTGATTTTGGTTGGGGGAAACCTAGGAGTTTTTGTCCTGTTACTTTGCCACAAAAAGAAGTTATTTTGTTCTTACCATATGGTGAAAATACAAGAAGTATTAATGTGTTTGTGGGTTTGCCTGCTTCTACTATGAAAATATTTGAAAAGAATATGGAGATATGA	1290	0.3279	MANKMNIKLGEPTLVLPAEPTKKGLYYLSNLDQNIAYPVRTIYCYKHYSKGNEDVTKVIKDSLSKILVHYYPMAGRLTISSEGKLIIDCTEEGVVFVEAEANCMMEDLGDMTKPKNIEILRKLVYDIPNAKNLLEIPPLLIQVTKFKCGGFVLGVNVNHCMNDGISAMQFVNSWSDIARGLDLKILPFLDRTILKPRNPPQIDFPHHEFAEIEDLSNTNKLIHEEEEMVYKSFYFNQNKLELLKKKATENGIVNKCSTFEVLSAFVWRARTKTLNVHPNQEMKLLFAVDGRSKFAPQIPKGYFGNAIILSNVMCKAGELLKNPLSFSVEVIKNSIEMVTDSYMRSAIDYFEVKRSKPSLTSTLLITTWTRLSFHEADFGWGKPRSFCPVTLPQKEVILFLPYGENTRSINVFVGLPASTMKIFEKNMEI	429

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g05312	429	FunFam	Spermidine hydroxycinnamoyl transferase	5	209	-	-
	Trre8g05312	429	Gene3D	-	1	211	IPR023213	-
	Trre8g05312	429	Pfam	Transferase family	10	428	-	-
	Trre8g05312	429	FunFam	Tryptamine hydroxycinnamoyl transferase	213	428	-	-
	Trre8g05312	429	Gene3D	-	212	427	IPR023213	-
	Trre8g05312	429	PANTHER	TRICHOTHECENE 3-O-ACETYLTRANSFERASE	13	424	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g05312	Trre-Chr8	55238538	55241169	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g05312	5	425	Monolignol Biosynthesis Gene Families	AT5G48930	37.123	3.02e-96	294

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g05312	K15400		-	gmx:100775546	617.076