Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05311 ATGAATTTTGTGAAGAAGTGTAAGAGAGTATTGGGAAGCAACAAGAGATTGTATGATTCACAAGAAAGTTGTGGAAGTGGAAGAAGCTATGGCAAAATATTAGAGAACAAGTGTCACAAAAAACAAAAGGATATTAATAATAAGAAACCACCAAATGGTTGTCTTTGTGTCTATGTTGGATCTGAGAGACAAAGATTTGTAATCAAGATCAAAATATTCAATCATCCTTTGTTCAAAACATTTTTAGAAGATGTTGAGAATGAATATGGTTATACAAATGATGGTCCTCTATGGCTTCCTTGTGATGTTGACTTGTTTTGTGAGGCACTTGTTGAGATAGAGAGTGATGATATGGGTTTTGTGGGTTGCATTTTTCCAATGGTTCACAAACACAGCCCAGTTTCTCATTCTTCATTTTCTTGTCGATCTTCTTATAACCTGAGTTGTGATGTAAATTACGAGGTTTTGATATAA 474 0.3397 MNFVKKCKRVLGSNKRLYDSQESCGSGRSYGKILENKCHKKQKDINNKKPPNGCLCVYVGSERQRFVIKIKIFNHPLFKTFLEDVENEYGYTNDGPLWLPCDVDLFCEALVEIESDDMGFVGCIFPMVHKHSPVSHSSFSCRSSYNLSCDVNYEVLI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05311 157 Pfam Auxin responsive protein 6 110 IPR003676 GO:0009733
Trre8g05311 157 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 43 110 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05311 Trre-Chr8 55234516 55234989 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05311 51 106 Calmodulin-binding Proteins AT4G34750 48.214 9.71e-16 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05311 K14488 - gmx:102667331 141.354