Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05307 ATGGATTTTGTGAAGAAGTGTAAGAGAGTATTGGGAAGCAACAAGAGATTGTATGATTCAGAAGAAAGTTGTGGAAGTGGAAGAAGCTATGGGAAAATATCAGAGAACAAGTGTCACAAAAAGCAAAAGGATATTAATAATAAGAAACCACCAAATGGTTGTCTTTGTGTCTATGTTGGATCTGAGAGACAAAGATTTGTAATCAAGATCAAAATATTCAATCATCCTTTGTTCAAAACATTTTTAGAAGATGTTGAGAATGAATATGGTTATACAAATGATGGTCCTCTATGGCTTCCTTGTGATGTTGACTTGTTTTGTGAGGCACTTGTTGAGATAGAGAGTGCTATGGATCACAAGCACAACTCAGTTTCACATTATTCTTCACTGTCTTGTCGTTCTAATTATAACTTGAGTTCTGCTGCCAATTATGAGATTTTGTTATAA 447 0.3423 MDFVKKCKRVLGSNKRLYDSEESCGSGRSYGKISENKCHKKQKDINNKKPPNGCLCVYVGSERQRFVIKIKIFNHPLFKTFLEDVENEYGYTNDGPLWLPCDVDLFCEALVEIESAMDHKHNSVSHYSSLSCRSNYNLSSAANYEILL 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05307 148 Pfam Auxin responsive protein 28 110 IPR003676 GO:0009733
Trre8g05307 148 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 43 110 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05307 Trre-Chr8 55204905 55205351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05307 51 106 Calmodulin-binding Proteins AT4G34750 48.214 7.02e-16 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05307 K14488 - gmx:102667331 134.42