Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05300 ATGATTAATGGTAGGTGTGCAGCTTGCAAAAATCAAAGAAGAAGGTGTCCTTCTGATTGCATTTTCTCTCCATATTTCCCTCCCAATGATCCTCAAAGATTTGCTTCTGTTCATCGAATCTATGGTGGTAGCAATGTTGGAAAAATGCTTCGGCAATTGCCTCCCTATGTACGACAACAAGCTGCAAATACTTTGTATTTAGAAGCACAATGTAGGATTCAAAATCCTGTTTATGGATGTGTTGGGATTATCTCTAAATTCAGCATGGAGCAGTTTCATTGGCCTACTCAAGATCCTAATTGGTTCAATTAA 312 0.3846 MINGRCAACKNQRRRCPSDCIFSPYFPPNDPQRFASVHRIYGGSNVGKMLRQLPPYVRQQAANTLYLEAQCRIQNPVYGCVGIISKFSMEQFHWPTQDPNWFN 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05300 103 ProSiteProfiles LOB domain profile. 4 103 IPR004883 -
Trre8g05300 103 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 87 - -
Trre8g05300 103 Pfam Lateral organ boundaries (LOB) domain 5 89 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05300 Trre-Chr8 55151139 55151794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05300 5 84 AS2 family AT3G26620 70.000 3.00e-40 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre8g05300 LOB 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05300 - - ccaj:109810657 174.866