Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05292 ATGGATAAGCTGAATTTTATTAAAAATGGAGTGAGTAGATTACCTCCTGGATTTCGTTTCCAACCAACTGATGAAGAACTTGTGTTTCAATATTTGAAATGTAAGATTTTTTCATTCCCATTGCCTGCTTCCATCATTCCTGAGGTCAATGTTTGCAAGTATGATCCTTGGGATTTGCCAGGAGGTTGTGATGAACAAGAGAGACACTTTTTCAGTTCAAAGGAAGCAAAGTATAGAAATAGTAATAGAATGAGTAGAACAACAAAATGTGGATATTGGAAGGCAACAGGGTCAGACAAAAGAATTTCATCTTCAACTTGTAATAATGGCAATATGGTTGGCCTAAGAAAAACTCTAGTTTTTTATGAAGGAAAATCCCCAAATGGGTCTAGAACTAATTGGATCTTACATGAATATCGTCTCATCAATGTAGACACTAGTCCCAACAACTCAACTCAGAACTATGGAAATGAAATAGGAGATTGGGTTTTGTGTCGATTATCTATGAGGAAAAGAAGTTTAGAATATGGAAGCACTAGTACTCATAATAATAATGCTACTAATTCGAGATTAATGTTTGATTTTATGATGGTAAACAACAACAAGACATGTTCTTCTACTTCCTCTTCATGTTCAAGTTCAAGTAACAACAACATTGAGGTCTCTTCAAATCATCACCAAGATGGCTATGCTGATTTTTAA 702 0.3462 MDKLNFIKNGVSRLPPGFRFQPTDEELVFQYLKCKIFSFPLPASIIPEVNVCKYDPWDLPGGCDEQERHFFSSKEAKYRNSNRMSRTTKCGYWKATGSDKRISSSTCNNGNMVGLRKTLVFYEGKSPNGSRTNWILHEYRLINVDTSPNNSTQNYGNEIGDWVLCRLSMRKRSLEYGSTSTHNNNATNSRLMFDFMMVNNNKTCSSTSSSCSSSSNNNIEVSSNHHQDGYADF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05292 233 MobiDBLite consensus disorder prediction 207 225 - -
Trre8g05292 233 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Trre8g05292 233 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
Trre8g05292 233 SUPERFAMILY NAC domain 10 169 IPR036093 GO:0003677|GO:0006355
Trre8g05292 233 MobiDBLite consensus disorder prediction 207 233 - -
Trre8g05292 233 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 213 - -
Trre8g05292 233 Gene3D NAC domain 23 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05292 Trre-Chr8 55059417 55061028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05292 1 173 NAC Transcription Factor Family AT5G13180 61.272 5.92e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g05292 NAM 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05292 - - gmx:100803200 344.354