Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05290 ATGGGTTGCGCGCTCGGAAAACCTACCGGTGCCGGAGCTCGAAACCGTCGGCGAGATAACACTGTTACTTCTGACGAAGGTAAAAATGCCGTTAAAGTTGAGGAGAGGAAGGAAGCTGAAGCTTCCAATACCGGTGAAGTTTCCGGCAATGTTCCGGCAACGGTGAGCCGGCTACCTCGAATCAATTCAATGGCGGCAGCCCAACCGAGTTGGCCGCCGTGGTTGATGGAAGTCGCCGGCGATGCAATCCGAGATTGGACTCCTCGCCGCGCCAACACTTTTGAGAAGCTTGCTAAGATTGGGAAAGGGACTTATAGCAATGTGTACAAAGCAAAAGACCTTATTACTGGAAAGATAGTGGCATTGAAGAAAGTTAGAATTGATAATATGGAGCCTGAGAGTGTGAAGTTCATGGCAAGAGAGATTCTTGTTTTAAGGAAGCTTGATCACCCCAATGTAATCAAGCTAGAGGGTTTGGTTACTTCAAGAATATCATCAAGTCTTTACTTGGTATTTGAGTACATGGAACATGATCTTGCTGGTCTTATTGCTGGCATTGGTGTCAAATTCTCTGAGCCTCAGGTAAAATGTTACATGAAACAATTATTGTCTGGACTTGAGCATTGCCACAGCCGAGGTGTATTGCACCGTGATATCAAGGGCTCCAATCTACTTATTGACGATGAAGGAATACTTAAAATTGCAGATTTTGGACTTGCAACTTTCTATGATTCTAAGCAAAAGCATGCGATGACTAGTAGAGTTGTGACCCTTTGGTATCGTCCTCCTGAGCTTCTTCTTGGGGCTACATTCTATGGTGTTGGGATTGATCTTTGGAGTGCTGGTTGCATCTTGGCAGAGCTTCTTGGTGGAAAGCCAATCATGCCCGGAAGAACAGAGGTTGAGCAACTGCACAAAATATATAAGTTATGTGGCTCTCCATCAGAGGAATATTGGAAGAAATATAGATTACCAAATGCTACTCTCTTTAAGCCACAACATCCTTATAAAAGGCGCATCTCAGAAACATTTGCGGATTTTCCATCTTCTTCATTACCTTTAATTCAATCTCTACTTGCAATAGATCCTGATGTTCGCGGCACTAGCTCATCAGCTCTAAATAGTGAATTCTTTACCACTGAGCCCTATGCTTGCGAACCATCGAGTTTACCAAAGTATCCTCCCACCAAAGAATTGGATGTAAAGCTGAGAGATGAAGCAAGAAGGCAAAGAGCTCTAAATGGCAAAACTAATTCAGTTGACAGTGTTGAACAAGTTAGAGTCCGTGAGCGCGGTTATGCAATTCCAGCTCCAGAAGCAAATGCAGAGATCCAAACAAACTTAGATAGGTTGAGAGTTGTGACAAATGCAGATGGTAAAAGTAAAAGTGAGAAATTTCCACCTCCTCATGAGGATGGAGCTGTTGGATATCTCGGGGAGGGTTCGAATAAAGGAGCTGCTTCATTTGGAACAACCAAAACAAATTCCTTTAGCTCAATATTATCTAATTCAATACATTCTAAATCTGTTGGAAGTTTTGCAGCAAGATCTTATAAAGGTTGGAGAAGTGGTGAAGCAGATTCCAAGTTATCTTCGTGGAAATTTATGCGTTCTTTCAAGCCGTCAACAGTAGGTCTTTCATTTAATTTATTATTTGGAAGCAGAAGATAA 1671 0.4255 MGCALGKPTGAGARNRRRDNTVTSDEGKNAVKVEERKEAEASNTGEVSGNVPATVSRLPRINSMAAAQPSWPPWLMEVAGDAIRDWTPRRANTFEKLAKIGKGTYSNVYKAKDLITGKIVALKKVRIDNMEPESVKFMAREILVLRKLDHPNVIKLEGLVTSRISSSLYLVFEYMEHDLAGLIAGIGVKFSEPQVKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDDEGILKIADFGLATFYDSKQKHAMTSRVVTLWYRPPELLLGATFYGVGIDLWSAGCILAELLGGKPIMPGRTEVEQLHKIYKLCGSPSEEYWKKYRLPNATLFKPQHPYKRRISETFADFPSSSLPLIQSLLAIDPDVRGTSSSALNSEFFTTEPYACEPSSLPKYPPTKELDVKLRDEARRQRALNGKTNSVDSVEQVRVRERGYAIPAPEANAEIQTNLDRLRVVTNADGKSKSEKFPPPHEDGAVGYLGEGSNKGAASFGTTKTNSFSSILSNSIHSKSVGSFAARSYKGWRSGEADSKLSSWKFMRSFKPSTVGLSFNLLFGSRR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05290 556 SMART serkin_6 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05290 556 FunFam probable serine/threonine-protein kinase At1g54610 81 176 - -
Trre8g05290 556 ProSiteProfiles Protein kinase domain profile. 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05290 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Trre8g05290 556 FunFam probable serine/threonine-protein kinase At1g54610 177 418 - -
Trre8g05290 556 SUPERFAMILY Protein kinase-like (PK-like) 87 383 IPR011009 -
Trre8g05290 556 Gene3D Transferase(Phosphotransferase) domain 1 177 418 - -
Trre8g05290 556 Pfam Protein kinase domain 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05290 556 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Trre8g05290 556 CDD STKc_CDK9_like 94 378 - -
Trre8g05290 556 PANTHER CELL DIVISION PROTEIN KINASE 92 382 - -
Trre8g05290 556 MobiDBLite consensus disorder prediction 1 52 - -
Trre8g05290 556 MobiDBLite consensus disorder prediction 12 42 - -
Trre8g05290 556 Gene3D Phosphorylase Kinase; domain 1 80 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05290 Trre-Chr8 55050210 55053422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05290 86 410 Core Cell Cycle Gene Families AT5G10270 51.613 1.46e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre8g05290 Pkinase 2.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05290 K08819 - gmx:100789359 831.632