Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05289 ATGGATGATGACCATCAATATGAAAATGGTAGGCATAAGGTGGAATACTACAGAGGAGCACATCCCCCGTGGAATACGGATCCCCAGCATCAAATAAAGGAACAAAATGCCCTAGTTATGAATAAAAAAATTAGGTCCATTATGGCTGAAAGGCAGGCTGCCCTTCTGGAACTTGAACTAGAGACTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTCGAGATGCAGCCCTTCGGCAGAGGGATGAAGCACTTGCTCAGAGGGATAGTGCTCTATTGGAACGGGATAATGCCCTTGCAGCCCTTCAAAGTCGGAGTGGTGCTGCCAACTTTCCATTCAATAGTGGCATTCAACGAGGGTCAAAGCGGATGCACCATTCTTCAAACCATATATCCAACATGGCAGAAGCAGCGTATAGCACGACGGATATTATAATAAGAGATGCTTCACCGGTTACTGTTATAACTTCTGAAGCTGTCAAATCTCATCTAACTAAGAGAACAAAGGAGAACAAGGCATCAAAGCCACCAACCAAAATAAAGAAACTGGGTGAAGATTTAAATAGGAAGGCTTATTCTGAAGGAACAAAGATAAAATCCGAATGGGATAGACAAGATGTTGGCTTGAATTTGATTGCTTTCGATGAAACTGTCATGCCTGTCCCAGTTTGCTCGTGTACCGGAGTACCACGACAGTGCTACAAATGGGGGAATGGTGGATGGCAATCATCTTGTTGTACCACTACATTGTCAATGCATCCACTACCACAGCTTCCCAACAAGCGGCATGCTCGCATTGGAGGGCGGAAAATGAGTGGCAGTGTTTTTATCAGACTTCTCAGTAGGTTTGCATCAGAAGGCCATGATTTATCTATACCGTTGGATCTTAAGGATTATTGGGCCAGACATGGAACAAATCGTTACATTACTATCAAGTAG 939 0.4388 MDDDHQYENGRHKVEYYRGAHPPWNTDPQHQIKEQNALVMNKKIRSIMAERQAALLELELETAISEKNEALAARDAALRQRDEALAQRDSALLERDNALAALQSRSGAANFPFNSGIQRGSKRMHHSSNHISNMAEAAYSTTDIIIRDASPVTVITSEAVKSHLTKRTKENKASKPPTKIKKLGEDLNRKAYSEGTKIKSEWDRQDVGLNLIAFDETVMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTTLSMHPLPQLPNKRHARIGGRKMSGSVFIRLLSRFASEGHDLSIPLDLKDYWARHGTNRYITIK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05289 312 Pfam GAGA binding protein-like family 1 312 IPR010409 -
Trre8g05289 312 SMART GAGA_bind_2 1 312 IPR010409 -
Trre8g05289 312 Coils Coil 53 73 - -
Trre8g05289 312 PANTHER - 1 312 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05289 Trre-Chr8 55047901 55048940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05289 1 312 BBR or BPC Transcription factor family AT2G21240 57.006 8.55e-125 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Trre8g05289 GAGA_bind 2.2e-98 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05289 - - gmx:100785547 520.39