Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05285 ATGGCAGCTTTTTCATACCAATACCAACAACCTTTCTTTGTTGACTCTGCTGCATACTTCACTACTAAGATGTCTTCTCTTGATGAACAAGTCCATATTATAAACAGTAGTAGTTGTTTTGATCAAAATTCTAAGAATAGCTTATGTGAGAATCTTAGTCCTGAATCATCTTCTATGGTTGTTGATAATCTTGAAAAGGGTGAACAAGTTACTCAGAAAGTTAGTTCTATGGAGAAGAAGAGAAGAGTTAGAAACAAGTCTTCTTTGAATAGCCCCTTATCTAAGGATGCAAAAGAAGGGAGAGGGAAAAAACAAAAGAAGAATAGTGGTGAGGGGATGAAAGGAGAAGAGAAGAAAAAAGAAGAGAAGAAGGTTCAAAAGAAAAATGTTGAAGAAGCTCCAACTGGCTATATCCATGTCAGAGCAAGAAGGGGTCAGGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGGTATTGCAACAACTTGTGCCTGGCTGTGATAAGGTAACTGGAAAGGCCCTTGTGTTGGATGAAATAATCAATTATGTACAGTCCCTACAGAATCAAGTAGAGTTCCTGTCAATGAAACTTGCTTCAGTGAATCCAATCCTCTATGACTTTGCAATGGACCAAGATCATCAAAGATTAAATAGTATAACATCACCATCACCATCATCAGTACCACTACAATCTGTAGCATTATGCAGCTCCAACCATGCCACACCTTTTGCTGACACAAGCTTCCACACTGCTAATAATGATCACTATGTTTTGGATTATCCAACTCAAGTTTTTCTTCAAGGACAGAGGTCAAATACCTTCTTTGAGGTACCTTAG 867 0.3841 MAAFSYQYQQPFFVDSAAYFTTKMSSLDEQVHIINSSSCFDQNSKNSLCENLSPESSSMVVDNLEKGEQVTQKVSSMEKKRRVRNKSSLNSPLSKDAKEGRGKKQKKNSGEGMKGEEKKKEEKKVQKKNVEEAPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQQLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPILYDFAMDQDHQRLNSITSPSPSSVPLQSVALCSSNHATPFADTSFHTANNDHYVLDYPTQVFLQGQRSNTFFEVP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05285 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 212 IPR036638 GO:0046983
Trre8g05285 288 Coils Coil 113 133 - -
Trre8g05285 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 196 IPR011598 GO:0046983
Trre8g05285 288 MobiDBLite consensus disorder prediction 96 130 - -
Trre8g05285 288 SMART finulus 152 202 IPR011598 GO:0046983
Trre8g05285 288 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 40 238 IPR024097 GO:0006355
Trre8g05285 288 MobiDBLite consensus disorder prediction 59 136 - -
Trre8g05285 288 CDD bHLH_AtBPE_like 136 220 - -
Trre8g05285 288 Gene3D - 143 214 IPR036638 GO:0046983
Trre8g05285 288 FunFam Basic helix-loop-helix transcription factor 143 215 - -
Trre8g05285 288 Pfam Helix-loop-helix DNA-binding domain 150 197 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05285 Trre-Chr8 55015109 55016835 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05285 1 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 45.703 1.47e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g05285 HLH 5.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05285 - - gmx:100796018 278.87