Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05283 ATGGCAGCTTTTTCATACCAATACCAACAACCTTTCTTTGTTGACTCTGCTGCATACTTCACTACTAAGATGTCTTCTCTTGATGAACAAGTCCATATTATAAACAGTAGTAGTTGTTTTGATCAAAATTCTAAGAATAGCTTATGTGAGAATCTTAGTCCTGAATCATCTTCTATGGTTGTTGATAATCTTGAAAAGGGTGAACAAGTTACTCAGAAAGTTAGTTCTATGGAGAAGAAGAGAAGAGTTAGAAACAAGTCTTCTTTGAATAGCCCCTTATCTAAGGATGCAAAAGAAGGGAGAGGGAAAAAACAAAAGAAGAATAGTGGTGAGGGGATGAAAGGAGAAGAGAAGAAAAAAGAAGAGAAGAAGGTTCAAAAGAAAAATGTTGAAGAAGCTCCAACTGGCTATATCCATGTCAGAGCAAGAAGGGGTCAGGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGGTATTGCAACAACTTGTGCCTGGCTGTGATAAGGTAACTGGAAAGGCCCTTGTGTTGGATGAAATAATCAATTATGTACAGTCCCTACAGAATCAAGTAGAGGTAATGTTCCTGTCAATGAAACTTGCTTCAGTGAATCCAATCCTCTATGACTTTGCAATGGACCAAGATCATCAAAGATTAAATAGTATAACATCACCATCACCATCATCAGTACCACTACAATCTGTAGCATTATGCAGCTCCAACCATGCCACACCTTTTGCTGACACAAGCTTCCACACTGCTAATAATGATCACTATGTTTTGGATTATCCAACTCAAGTTTTTCTTCAAGGACAGAGGTCAAATACCTTCTTTGAGCACACTGATGGACCCTTTTGGGATGTAGAAGACCAACGACAGAAGCTTCTTAATCCATATGGATTCGGCAACAATACATGTTCCTTAAATTAA 957 0.3845 MAAFSYQYQQPFFVDSAAYFTTKMSSLDEQVHIINSSSCFDQNSKNSLCENLSPESSSMVVDNLEKGEQVTQKVSSMEKKRRVRNKSSLNSPLSKDAKEGRGKKQKKNSGEGMKGEEKKKEEKKVQKKNVEEAPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQQLVPGCDKVTGKALVLDEIINYVQSLQNQVEVMFLSMKLASVNPILYDFAMDQDHQRLNSITSPSPSSVPLQSVALCSSNHATPFADTSFHTANNDHYVLDYPTQVFLQGQRSNTFFEHTDGPFWDVEDQRQKLLNPYGFGNNTCSLN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05283 318 Coils Coil 113 133 - -
Trre8g05283 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 196 IPR011598 GO:0046983
Trre8g05283 318 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 40 242 IPR024097 GO:0006355
Trre8g05283 318 MobiDBLite consensus disorder prediction 96 130 - -
Trre8g05283 318 SMART finulus 152 202 IPR011598 GO:0046983
Trre8g05283 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 205 IPR036638 GO:0046983
Trre8g05283 318 CDD bHLH_AtBPE_like 136 222 - -
Trre8g05283 318 Pfam Helix-loop-helix DNA-binding domain 150 197 IPR011598 GO:0046983
Trre8g05283 318 FunFam Basic helix-loop-helix transcription factor 143 217 - -
Trre8g05283 318 Gene3D - 143 212 IPR036638 GO:0046983
Trre8g05283 318 MobiDBLite consensus disorder prediction 59 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05283 Trre-Chr8 55015109 55017300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05283 1 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 45.349 6.55e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g05283 HLH 6.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05283 - - gmx:100796018 309.301