Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05279 ATGGCAAAGGCAAGGGATAGGACTGAGGATTTCAAAGATGCTGTGCGCAAAAGTGCTCGCTCTTTGGGGTATGATGAGGCTAAATTGGCATCCATTTTGGCATCTTTTATTATTCATAAACCTCCACAAAGGTCCCCATTCACCAAAGCTGCATATAAGACGCTCGAGAGTATTGGAGAATTGGACCATTTTTTGTTAAAGCATAGAAAGGACTATACAGATCTGCACCGAACAACAGAACATGAGAGAGATAGCATTGAGAATGAAGTTAGTGCTTTTATTAAAACTTGCCAGGAACAAATTGACGTTCTTAAGAATAGTATAAACAGTGAAGAGGAAAGCTCAAAAGGTTGGCTTGGCATCACCACTGCAAAGGCTAACGCCGACACCATTGCCCACAAACATGGGGTGGTTCTAATTTTAAGTGAGAGGCTTCATTCAGTTACGGCACAGTTTGATCAACTCAGAGCTATACGCTTCCAGGATGCTATTAATAGGGCAATACCACGAAGAAAACTTAATCGTGTAACCAGGAAAGAATCTACCGAAACCTCTAATTCAGGTGATGTGGAGCTCAGAGAACCAGATGAGTTGCGCAGTGAGCCTCTAAGAGTCCAACAGCAACTCTTGGATGATGAAACACGTTCCCTTCAGGTGGAATTGTCTAGTCTTCTAGACACAGTTCAAGAAACTGAAACTAAGATGGTAGAAATGTCTGCATTAAATCACTTGATGGCTACACATGTTTTGCAACAAGCTCAACAAATTGAGCATCTGTATGACCAGGCTGTTGAAGCTACCAAGAATGTTGAGCTTGGTAACAAAGAACTCTCACAAGCCATTCAACGAAATAGCAGCAGCAGAACATTTCTTTTACTATTTCTGTTTGTGCTCACTTTTTCCATCATCTTTCTTGATTGGTATAGTTAA 930 0.4108 MAKARDRTEDFKDAVRKSARSLGYDEAKLASILASFIIHKPPQRSPFTKAAYKTLESIGELDHFLLKHRKDYTDLHRTTEHERDSIENEVSAFIKTCQEQIDVLKNSINSEEESSKGWLGITTAKANADTIAHKHGVVLILSERLHSVTAQFDQLRAIRFQDAINRAIPRRKLNRVTRKESTETSNSGDVELREPDELRSEPLRVQQQLLDDETRSLQVELSSLLDTVQETETKMVEMSALNHLMATHVLQQAQQIEHLYDQAVEATKNVELGNKELSQAIQRNSSSRTFLLLFLFVLTFSIIFLDWYS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05279 309 SUPERFAMILY t-snare proteins 56 273 IPR010989 GO:0016020|GO:0016192
Trre8g05279 309 Gene3D - 211 306 - -
Trre8g05279 309 MobiDBLite consensus disorder prediction 175 197 - -
Trre8g05279 309 FunFam Syntaxin-81 like 212 306 - -
Trre8g05279 309 PANTHER SYNTAXIN-18 1 309 - -
Trre8g05279 309 Coils Coil 94 114 - -
Trre8g05279 309 Pfam SNARE-complex protein Syntaxin-18 N-terminus 6 86 IPR019529 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05279 Trre-Chr8 54975659 54980003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05279 65 309 SNARE and Associated Proteins AT1G51740 74.797 4.08e-116 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05279 K08492 - gmx:100778011 531.561