Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05276 ATGGCTAAACATCAAAACGAGGAAAAACACCAAGAATTGGAAATCGAATGCGACGACGAGGCTGAATCTGAAATTGAGGCGCCATTGCCTCTCACAGTCACTTCGAGGGCTTTGTATATGTTGGGAGATATAGCTGCAGGGCCTGCGTTTAGGTTCACGCAATGGCTCCAATTGGTTCGTAAACGCACTTCTAATTATCGCTCTTCTGGCTTTCCTCGTCGTCCTTCATCCACCATGCTTTCTAATTCTAGCGTCAAAGAATCAACTGAGGATCCCAAATGTGATATACAGCCTGATCAAACAGGAATTAGCTTATGGGAGAGACTTGGGAAAGCTGCAATGTTGGATATTGAATCAGGCTCCTTTTCTTGGGATGAGCTCTCTTCATTGCACCATACTGAACACAGCAGTAGTAATGAACATTCTGAAGATGAAATGAACAAAGCTCTTGAGGTAACCGTGAATTCTGGAGGTGTTGTCTTCTTTGCATTTTTCGATTGTCAAGGGAGTGATGATGCTTCTCCAAATGAGGCGGCAGCTGTTATAAAAATAGCATCATCAAGAATGGCAACGCAATCTGAACGCCTCGGATATGAATTGGCCAAGTGGCTTGGAATCCAAACTCCGCAGGCTAGAGTCATTCACAATACCAGTTCAGAATGGCAGCAAATAAAGGAAGCTACAGAAAAAGCTAGAGAAGCGGCGGCAAGTTCTGGGAGTGATGAAGTTGGTGAAGTGACATGTTTTGAACTTTTGGAAGCTCTTGAGCTTAGCCGATGTCTGTTTTTAATGAGTTATGTGCATGGTTCACCATTGCTTGAAAGCTCTAGTGCCTTTGAGCTACGGGAATCTGCAGAAAAAACAGCGGAAGCTCTTGGCAGGGTACTGATGCTGGACTTAGTCATCCGAAATGAAGATAGGCTCCCTTGCCGTGAACTTAGATGGCGTGGGAATTCTGCAAATTTGCTGTTGGCTGAAAAGATGATCTCTGGCAATACAAATACACTAGAAGCTGCTTTGGATTCTGCAATTAATCAATATAGACCGAAGGTGATTAGGGCACTTCAAAAAGAAAGAAGGTCAAGTTCAGTAGATAGCAAATTGAATTCCCATAATCCCGGCTTGATCTCACAAGCCTCTGATCTTTCAGAGATCATAGATTCACCGAGATCCACTGACATGAGCCTTATAAGTCAAATGTCAGAAGAATCAATGTCTTCTGACCTTAACATTGTAGTCATTGATTCTGGTGTTCCTCGGCGACCCCCTGCTGGAAAACGTGCAAATGATCAAGTTAATTATCCTAAGTTGGTTGAGTTGCTGATCAATAGTTCCGAGTATGCATCAAACCTGTTAAATGATATAACTGGAGGGAAATTAGGATGTCCTCTACCAGAAGACATGGATGCAACTGATATACACGCAAGTGACATGACATCAATAGTTCATGCATTTCGTACTGGTTTCCGAGCTTCTCTTAGGGATCTACAGGGATTCCATATATTCCTACTCACCCTTCATCAAAGACTGGATACTTTGTTGCGATCATTCATGAACATTATAAGCAAACTATCTTCAGGGGAATCTGACAAGGAGGACTTACTGGTTCCTGACTCGCCTTCACTTGCTGGTTGTTCCTCTCCGACAAGTAAAGAGAGATATGCTAATGATAACAATCAAGATATTACTGATTCGGAATCACAGAGAACTACTTCAAGGTCATTGTCTTCATGTAATAGAGATTGTAGTGACTCAACTTCAGCATCAAGAGAGAGTTGGCATGGAAGGTCCTGTAAAGGATATGGGGAGCTACAGCGTAATCTCCGTTTGACAGCCAAGCTCCGTGACTTTAATAAATATGCCAAGGTTGATGCTGAATCTAGTAAAGAATTGGAACAGTGGAATGAAATGCTTAAAAATGACGCTGTCAAGCTATGCCAGGAGAACAATTTCAATACAGGATTTTTCGAGGGCAGTGAAAATAACAGTGTCATTGATGCATATGAACTGAAGGTCAGACTTGAACATATTCTTGAGAGAATCGCATTGATATCTGAGGCTGCAAGTACAGAGAAACCATCTGCTGTTACAAGCTATCTGTTCATTGGTGGAGCACTGGCTGCAAGATCTGTATACACTATGCAATACTTGGGAATCACACATATTTTGTGTTTGTGTACAAATGAAATTGGACAATCCGAAACTCAATTTCCTGATATATTTGAGTACAAAAATTTCTCGGTATGTGACAGTGAAGATTTTAACATCACCACTGTATTTGAAGAAGCGTGTGATTTTATAGATTGTGTTGAACAAAAAGGTCAGAAGATTTTAGTCCATTGCTTTGAAGGGAAAAGCAGAAGTGTTACATTGGTCCTTGCTTACCTAATGCTCAGGAAGAAGTATACTTTATTAAAAGCATGGCAAAAACTGAAACGAGTTCACCGTCGAGCACAGCCAAATGATGGTTTCGCAAAAATCTTACAAGAACTGGATCAGAAACTGCATGGGAAAGTTTCAATGGAGTGGCAGCATCGAAAACCAACCATGAAAGTTTGTCCCATCTGTGGAAAAAATGCTGGGTTAAGCAGTAGTTCACTTAAGTTACATCTGCAGAAATCCCATAGAAAGCTATCATCAGGTAGTGTAGATAGTGCCATGACAATGGAAATCCAAAAGGCATTAACAGCTTTGAAGATTAGCCGCAGTGGGAGTATTAGCCCTACACAAAAGACTTCGCCAAACGGTAGCAGTTTATAG 2760 0.4149 MAKHQNEEKHQELEIECDDEAESEIEAPLPLTVTSRALYMLGDIAAGPAFRFTQWLQLVRKRTSNYRSSGFPRRPSSTMLSNSSVKESTEDPKCDIQPDQTGISLWERLGKAAMLDIESGSFSWDELSSLHHTEHSSSNEHSEDEMNKALEVTVNSGGVVFFAFFDCQGSDDASPNEAAAVIKIASSRMATQSERLGYELAKWLGIQTPQARVIHNTSSEWQQIKEATEKAREAAASSGSDEVGEVTCFELLEALELSRCLFLMSYVHGSPLLESSSAFELRESAEKTAEALGRVLMLDLVIRNEDRLPCRELRWRGNSANLLLAEKMISGNTNTLEAALDSAINQYRPKVIRALQKERRSSSVDSKLNSHNPGLISQASDLSEIIDSPRSTDMSLISQMSEESMSSDLNIVVIDSGVPRRPPAGKRANDQVNYPKLVELLINSSEYASNLLNDITGGKLGCPLPEDMDATDIHASDMTSIVHAFRTGFRASLRDLQGFHIFLLTLHQRLDTLLRSFMNIISKLSSGESDKEDLLVPDSPSLAGCSSPTSKERYANDNNQDITDSESQRTTSRSLSSCNRDCSDSTSASRESWHGRSCKGYGELQRNLRLTAKLRDFNKYAKVDAESSKELEQWNEMLKNDAVKLCQENNFNTGFFEGSENNSVIDAYELKVRLEHILERIALISEAASTEKPSAVTSYLFIGGALAARSVYTMQYLGITHILCLCTNEIGQSETQFPDIFEYKNFSVCDSEDFNITTVFEEACDFIDCVEQKGQKILVHCFEGKSRSVTLVLAYLMLRKKYTLLKAWQKLKRVHRRAQPNDGFAKILQELDQKLHGKVSMEWQHRKPTMKVCPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKALTALKISRSGSISPTQKTSPNGSSL 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05276 919 Gene3D Protein tyrosine phosphatase superfamily 675 847 IPR029021 -
Trre8g05276 919 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 10 913 IPR035010 GO:0004721|GO:0009737|GO:0043622
Trre8g05276 919 MobiDBLite consensus disorder prediction 1 20 - -
Trre8g05276 919 MobiDBLite consensus disorder prediction 66 95 - -
Trre8g05276 919 CDD DSP 693 830 - -
Trre8g05276 919 Pfam Actin-fragmin kinase, catalytic 103 418 IPR015275 -
Trre8g05276 919 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 761 813 IPR000387 GO:0016311|GO:0016791
Trre8g05276 919 MobiDBLite consensus disorder prediction 66 87 - -
Trre8g05276 919 FunFam Dual specificity protein phosphatase PHS1 664 838 - -
Trre8g05276 919 SUPERFAMILY Protein kinase-like (PK-like) 54 431 IPR011009 -
Trre8g05276 919 ProSiteProfiles Dual specificity protein phosphatase domain profile. 692 837 IPR020422 GO:0006470|GO:0008138
Trre8g05276 919 MobiDBLite consensus disorder prediction 542 593 - -
Trre8g05276 919 Pfam Dual specificity phosphatase, catalytic domain 707 833 IPR000340 GO:0008138|GO:0016311
Trre8g05276 919 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 692 837 IPR029021 -
Trre8g05276 919 SMART dsp_5 692 834 IPR020422 GO:0006470|GO:0008138
Trre8g05276 919 Gene3D - 272 406 IPR036940 -
Trre8g05276 919 Gene3D - 109 263 - -
Trre8g05276 919 MobiDBLite consensus disorder prediction 530 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05276 Trre-Chr8 54960954 54967572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05276 24 901 Protein tyrosine phosphatase (PTP) family AT5G23720 65.354 0.0 1133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05276 K14165 - gmx:100791993 1417.91