Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05273 ATGTTTATGATGAGAGATCTGGAAGAAAGAGATAACATGGCATCATCTGAAGTATCTATGAAGGGAAATTCTGTTAACGGAAAAGGTGAAACCAACGATTGTGTTGCCGATGGACAACAAAATGGTTCTTCATCTTCATCATCAGGAAGAGAAGCTGAAGCTGCACTTTACAGAGAACTATGGCATGCGTGTGCTGGACCTTTGGTAACGGTTCCAAGAGAAGGAGAACTTGTGTTCTATTTTCCTCAGGGACATATTGAACAGGTTGAGGCTTCAACAAATCAGGCTTCGGAACAACACATGCCTGTTTACGATCTCCGACCTAAGATCCTTTGTCGGGTCATCAACGTTATGTTGAAGGCTGAGCCAGATACTGATGAGGTGTTTGCACAAGTGACTTTGGTTCCAGAGCCAAATCAAGATGAGAATGCGGTGGAGAAAGAACCTCCGCCTGCTCCTCCGCCGCGGTTTCACGTCCATTCGTTTTGTAAAACGTTGACCGCATCTGATACTAGTACTCATGGTGGTTTTTCTGTTCTTAGGCGTCACGCTGATGAATGTCTTCCTCCACTGGATATGTCAAAGCAACCACCTACACAGGAATTGGTGGCCAAGGATCTACATGGGAATGAGTGGCGTTTTAGGCACATCTTTCGCGGTCAACCGCGTAGGCACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGTTCTAAGAGGCTGGTTGCTGGGGATGCATTTATATTTCTAAGAGGTGAGAATGGGGAGCTTCGTGTTGGTGTCAGGCGTGCAATGAGACAGCAGGGTAATGTTCCGTCCTCCGTTATCTCTAGCCATAGCATGCATCTTGGTGTCCTTGCAACTGCTTGGCATGCTGTGTTGACTGGGACCATGTTCACTGTTTATTACAAGCCTCGGACCAGTCCAGCTGAATTTATTGTTCCATATGATCAATACATGGAGTCTCTTAAAAATAATTATACCATAGGCATGCGCTTTAAAATGCGATTTGAAGGTGAAGAAGCTCCTGAACAAAGGTTTACTGGTACCATTGTTGGTATTGAAGACTCCGACTCCAAAAGATGGCCTAAATCTAAATGGAGATGTCTCAAGGTTAGATGGGATGAAACATCTAACATACCTCGCCCCGAAAGAGTTTCCCCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCAGCTTTAAATCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGGGCTAATGTGGTTCCATCATCTCCGGATTCTTCTGTTCTTACCCGCGAAGCATCATCTAAAGTAAGCATGGACCCTTTACCCTCTAGTGGTTTTCCGAGGGTCTTGCAAGGTCAAGAATCATCGACCTTGAGAGGAAATCTGGCAGAAAGCAACGACTCTTATACTGCAGAGAAGTCTGTTGCGTGGCCACCAACAAATGATGATGATAAGATTGATGCTGTTTCTACTTCAAGAAGGTATGGAGCCGAGAACTGGATGTCGATGTCAAGGCAGGAAGCGACATATTCAGATCTTCTGTCAGGATTTGGTGGTACCCGTGGAGATCATTCTTCCCAACCATTATTTGTCGAGCAAACTGGTCATGTGATCAATCACAGTAGGAAAAGTTTGTTTGACCGTGAAGGCAAACATAATATGCTAAGTCAATGGCCTGCAATGCCACCTGGTCTGTCGCTCAATTTCTTGCACTCTAATACGAGAGGTTCTGCCCAAGGCGGTGATAATACACCTTACCAAGTCCCAGGGAATATGAGGTACAGTGCTTTCGGTGATTATTCTGTGCTTCATGGACATAAAGTTGAAAATCCGCATGGAAACTTTTTGATGCCGCCGCCACCTCCAACTCAATATGAGAGTCCTCATTCAAGAGAACTGCCTCACAGACAAGTATCTTCAAATTCAAGTGAGGCTGCAAAGCCGAAAGACGGTGACCCTAAGCTATTTGGTTTCTCACTTCTCAGTAGCCCCACAATGCCAGAAACTTCCATGTCACAAAGAAGCAATACTAGTGAGGCAGTTAGTCACATGCAAATTTCATCACAGCAACATAATACATTTGAAAATGATCAGAAGTCTGAGCATTTAAAGTCCTCAAAACCAGCTGCTGATAATCCAGTTGTAGTTGACGATCAAGAGAAGCTGTTGCAAACTTCTCAGCCTCATGTTAAAGATGTTAAACACAAATCACAAACTGGTTCTGCTAGAAGTTGCACGAAAGTTCACAAGAAAGGGATTGCACTTGGTAGATCTGTCGACCTTACCAAGTTTAGTGACTATGACGAATTGACCGCTGAATTGGACCAGATTTTTGAATTTGGAGGTGAATTAATATCTCCACAAAAGGATTGGCTTGTTGTCTTCACCGATAATGAGGGTGACATGATGCTTGTTGGCGATGACCCATGGCAGGAGTTTTGTTCGATGGTACGCAAAATTTACATCTACCCGAAAGAGGAGATTCAGAAAATGAGCCCTGGTACCTTGAGTTCAAAAAATGAAGAGAATCATTCAGCTACCGAAGGCGCGGATGCACAAGAAACTAAGTCTCAGCTGAATCAATCAGCTTCAGATGCTTGA 2589 0.4442 MFMMRDLEERDNMASSEVSMKGNSVNGKGETNDCVADGQQNGSSSSSSGREAEAALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEPPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDSKRWPKSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANVVPSSPDSSVLTREASSKVSMDPLPSSGFPRVLQGQESSTLRGNLAESNDSYTAEKSVAWPPTNDDDKIDAVSTSRRYGAENWMSMSRQEATYSDLLSGFGGTRGDHSSQPLFVEQTGHVINHSRKSLFDREGKHNMLSQWPAMPPGLSLNFLHSNTRGSAQGGDNTPYQVPGNMRYSAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESPHSRELPHRQVSSNSSEAAKPKDGDPKLFGFSLLSSPTMPETSMSQRSNTSEAVSHMQISSQQHNTFENDQKSEHLKSSKPAADNPVVVDDQEKLLQTSQPHVKDVKHKSQTGSARSCTKVHKKGIALGRSVDLTKFSDYDELTAELDQIFEFGGELISPQKDWLVVFTDNEGDMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEENHSATEGADAQETKSQLNQSASDA 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05273 862 MobiDBLite consensus disorder prediction 1 15 - -
Trre8g05273 862 MobiDBLite consensus disorder prediction 415 436 - -
Trre8g05273 862 MobiDBLite consensus disorder prediction 607 741 - -
Trre8g05273 862 FunFam Auxin response factor 325 397 - -
Trre8g05273 862 MobiDBLite consensus disorder prediction 444 471 - -
Trre8g05273 862 Gene3D - 735 828 - -
Trre8g05273 862 MobiDBLite consensus disorder prediction 846 862 - -
Trre8g05273 862 MobiDBLite consensus disorder prediction 394 483 - -
Trre8g05273 862 ProSiteProfiles PB1 domain profile. 739 821 IPR000270 GO:0005515
Trre8g05273 862 SUPERFAMILY DNA-binding pseudobarrel domain 158 291 IPR015300 -
Trre8g05273 862 MobiDBLite consensus disorder prediction 828 862 - -
Trre8g05273 862 Pfam AUX/IAA family 657 826 IPR033389 -
Trre8g05273 862 Gene3D - 325 395 - -
Trre8g05273 862 MobiDBLite consensus disorder prediction 16 50 - -
Trre8g05273 862 CDD B3_DNA 160 262 IPR003340 GO:0003677
Trre8g05273 862 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
Trre8g05273 862 MobiDBLite consensus disorder prediction 658 690 - -
Trre8g05273 862 MobiDBLite consensus disorder prediction 394 412 - -
Trre8g05273 862 Pfam Auxin response factor 288 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre8g05273 862 FunFam Auxin response factor 160 264 - -
Trre8g05273 862 SUPERFAMILY CAD & PB1 domains 741 816 - -
Trre8g05273 862 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 54 828 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre8g05273 862 Gene3D - 159 264 IPR015300 -
Trre8g05273 862 SMART B3_2 162 264 IPR003340 GO:0003677
Trre8g05273 862 FunFam Auxin response factor 734 828 - -
Trre8g05273 862 MobiDBLite consensus disorder prediction 1 50 - -
Trre8g05273 862 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
Trre8g05273 862 MobiDBLite consensus disorder prediction 720 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05273 Trre-Chr8 54941657 54945687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05273 13 862 B3 DNA Binding Superfamily AT5G62000 64.147 0.0 1085
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre8g05273 AUX_IAA 4.4e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05273 - - gmx:100815956 1363.98