Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05271 ATGCATTTCACAAATCTCGATGACACTCCTATGTTCCGTCAACAGCTCCAATGCTTGGAGGAAAGTGCAGAATCATTACGCCTTAGAAGCTGCAAGTTCTACAAAGGATGTCGAAAGTATACGGAAGGGCTCGGAGAGGCATATGATGGAGACATCGCATTTATAAGTTCCCTTGAAAGTTTTGGAGGAGGGCATAATGATCCTCATTTCGTTGCTTTGGGAGGACCTGTAATGAACAAATTTACCATTGCTTTGAGAGAAATCACTACATACAAGGAACTTCTTAGGTCACAGGTAGAGCACATGATTGATGACCGGTTACTACAAATTGTCAATATTGACATCAATGAAGTCAAGGAAGCTCGTAAGCGTTTTGATAAAGCTTCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGTCACTGAGAAAAAGCACTAAGATTGATATTGCCACCGTCGTAGAAGAGGAATTGAAGGATGCAAGAACGTCGTTTGAGGAAGCCCGTTTCAGTCTGGTTGGTTCTCTTAATAACATTGAGGTCAAGAAGAGATTTGAGTTTTTAGAGGTTGTCACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTACTACAGGAGATGGAACCTTTCATTAGCGAGGTTTTGGATTATGTACAACAGTCAAAAGAAAATTTTGATAAGGACCAGATTTTACTTTATAAAAGAATGCAGGAATACAAGAAACAGGTTTATCAAGAAAGTAGGCTTTCCTTGAATGGCCCGGATGGTTCTCCTACTGGAGACTCTGTACATCCCTTTTCTAGAATATCACCTGAAGTAGGAGATGTAATAAAGGAATCTGCCGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAGCGGTCTTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTCTTGATAGCCGAGGAATGTTGTATTACTATCGCAAACCATGGAGTGTGTCATATGGCAATGATCAACCATCTCCAAGAAAGAATAATGCCAATGAAAATGGTTCTGGGTTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAAATCTGTAGCACGTCATACAGTAAATCTGCTGACATCAACTATAAAGGTTGATGCTGATCAGTTGGATTTAAGATTTTGCTTCAGAATAATTTCGCCATCAAAGAGCTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGAGTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTGAGTGTCCAGACCCTAGGATCACCATCAGCTGACTCAGAAACCGGTGACTCTTACTCAGCCGACAAGATTGATATGTTAGAAAGTTCTCCAGATGATGATCGCACTGAGGTCGTAAAGTCTGGATCCAAGAATTCCACCCCCAGTAACCACTTACGTTTATCTAAAAACTGGGCATCTCTAAACCTCGGCATCCTTATATGCATTGAATGCTCTGGTGTTCATCGTAATCTTGGGGTGCATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTATGGGACCACTCTGTCTTAAGTATGTTTGAGTCCCTGGGCAATGATTTTGCAAACTCAGTTTGGGAGGAGCTGTTATGTTCAAGGAGTACTTTGCAAGATGTTGACACCCATGTTGGTTCATCCAAGGAAAATAGAGACAGCCTATTTCATGCAAGAAAACCAAAACACGATGATTCTAATCAATTAAAGGAAAAGTTCATTCACGCAAAGTATGCTGAGAAAATATTTATTTGCCGGAAAGAGAAAACCCCCGCACAACAAATGTTGGAAAGCATCTGTGCTAATGACAAGAAGGCAGTGTACCAGCACATTGTCAAGTCAGAAATGGATGTCAATGCCATCAGTAAGCAAGCACTTTCTGGTAACTCTTCCAGCATTGCTTCTTTGATTAATTTCAACAAATCATCTGAAAGTGAGTATCAGTTTATTGAGGACATACAAGATGGTTCTAGTGTGCTTCACCTGGCTTGCTTAACAAGTGACGCTGGCATGAGGTCGGACACCGCTAAAGTGCTTCTACTGAGGGGGGCCAATCCACATGTACCTGATAAAGAAGATAACACTCCTCTTAAGCTTGCAATCGAATCCAGCTGTGTTGGCAATGAAATTCTCACTCTCTTGTCAAGCAGATGA 2205 0.41 MHFTNLDDTPMFRQQLQCLEESAESLRLRSCKFYKGCRKYTEGLGEAYDGDIAFISSLESFGGGHNDPHFVALGGPVMNKFTIALREITTYKELLRSQVEHMIDDRLLQIVNIDINEVKEARKRFDKASLVYDQAREKFMSLRKSTKIDIATVVEEELKDARTSFEEARFSLVGSLNNIEVKKRFEFLEVVTGIMDAHLRYFQQGYQLLQEMEPFISEVLDYVQQSKENFDKDQILLYKRMQEYKKQVYQESRLSLNGPDGSPTGDSVHPFSRISPEVGDVIKESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWSVSYGNDQPSPRKNNANENGSGFLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKVDADQLDLRFCFRIISPSKSYTLQAENAVDQMEWMEKINGVIASLLSVQTLGSPSADSETGDSYSADKIDMLESSPDDDRTEVVKSGSKNSTPSNHLRLSKNWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDHSVLSMFESLGNDFANSVWEELLCSRSTLQDVDTHVGSSKENRDSLFHARKPKHDDSNQLKEKFIHAKYAEKIFICRKEKTPAQQMLESICANDKKAVYQHIVKSEMDVNAISKQALSGNSSSIASLINFNKSSESEYQFIEDIQDGSSVLHLACLTSDAGMRSDTAKVLLLRGANPHVPDKEDNTPLKLAIESSCVGNEILTLLSSR 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05271 734 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Trre8g05271 734 Gene3D - 607 734 IPR036770 -
Trre8g05271 734 SUPERFAMILY PH domain-like 203 428 - -
Trre8g05271 734 CDD BAR_SFC_plant 15 215 IPR035670 -
Trre8g05271 734 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Trre8g05271 734 CDD ArfGap 488 595 - -
Trre8g05271 734 SUPERFAMILY Ankyrin repeat 616 723 IPR036770 -
Trre8g05271 734 SUPERFAMILY ArfGap/RecO-like zinc finger 487 602 IPR037278 -
Trre8g05271 734 PRINTS HIV Rev interacting protein signature 517 538 IPR001164 GO:0005096
Trre8g05271 734 PRINTS HIV Rev interacting protein signature 494 511 IPR001164 GO:0005096
Trre8g05271 734 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Trre8g05271 734 SMART PH_update 293 430 IPR001849 -
Trre8g05271 734 SMART arf_gap_3 476 609 IPR001164 GO:0005096
Trre8g05271 734 Pfam Putative GTPase activating protein for Arf 486 601 IPR001164 GO:0005096
Trre8g05271 734 MobiDBLite consensus disorder prediction 438 478 - -
Trre8g05271 734 ProSiteProfiles ARF GTPase-activating proteins domain profile. 451 608 IPR001164 GO:0005096
Trre8g05271 734 Gene3D Arf GTPase activating protein 459 606 IPR038508 -
Trre8g05271 734 Pfam PH domain 294 427 IPR001849 -
Trre8g05271 734 MobiDBLite consensus disorder prediction 448 470 - -
Trre8g05271 734 ProSiteProfiles Ankyrin repeat profile. 672 708 IPR002110 GO:0005515
Trre8g05271 734 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Trre8g05271 734 CDD PH_ACAP 295 432 - -
Trre8g05271 734 PANTHER CENTAURIN/ARF 4 688 IPR045258 GO:0005096
Trre8g05271 734 Coils Coil 118 138 - -
Trre8g05271 734 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Trre8g05271 734 Gene3D - 285 438 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05271 Trre-Chr8 54888326 54897840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05271 488 601 C2H2 Transcription Factor Family AT4G21160 39.130 5.76e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05271 K12489 - gmx:100792517 1069.3