Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05268 ATGTCTGAGATGAATGAACCAAATTCAGAGAAAGTTTGTGAAACTGTTGCTGAACCAAATTCAGAGAAAGTTTGTGAAACTAGTGGTGAGTCTCCAACTACACCAGTTGGAAAACAACCAGAAGAAGCTGAACCAAAAAGTAGTGAAAGAATCAAAGCTACAAGACATCCTAGATGGACAAGACAAGAAACACTTGTTCTAATTGAGGCAAAGAAAGTGATTGAAAATGGTGATCAAGTTTGCAGATACAGATCATCAACATCAGGTTTGGTTCAAACCGACCCGAAATGGGATTTGGTTTCATCATTGTGTCAACAACATGGTGTCAAAAGAGGAGCTGTTCAATGTAGGAAAAGATGGGGAAATCTTTTAACTGATTACAGGAAGATCAAGAAATGGGAGACAAATATAAAAAATGAGTCTGAGTCTTTTTGGATAATGAGAAATGATGTGAGGAAAGAAAATAAATTGCCTGGTTTCTTTGATGCTGTTGTGTACAATGTATTGGATGGAGGGGTTTGCACTGCTGCTGCATTTCCACTGACACTGATCAAAACTACGCCGAGAGTGGAGAATGGTGATCAAGTTGAAGCCGTGGCGGCGTTAGAGCAAGGTAATAAAGAGGATGAAATTGAGGAGGATGAGGATGAGGCTATTGTTGATAGTGACAAAATGGGTTGGAGCACTGAAGAGGAAAACATGGATACAAACACAAATGGAAATATGGTTAACAGTCCATTCAAAACACCAAATGCTAAGAAAACCAGCATTGGAGGGACTCTGAAAATGACACCAATTATACTGCCTAGTTCAACAGAGAGACAGCAACAACCATTTTTCCAAGGGAACTACGATCCAGGGTGTCAGAGGGAACCTCTGTTCAATGAGGGATACAAAAGAAAGCGATTATCCCCAGGTGATTTTGAAGAAACCACAGATTTTAATGAAGATGTAATCAAAGTGCTAAGAAGGAATAGTAACATACTGAAAGCTCACCTCGGAGCTCAGAACATCAATTCCCAATTGGCCAGAGACCAGCAGAAGCAGCAAACAGATAGCTTAGTTTCGGCCCTTGGAAGGCTTACTGATGCTATCACAAAAATTGCAGACAAGATGTAA 1119 0.4013 MSEMNEPNSEKVCETVAEPNSEKVCETSGESPTTPVGKQPEEAEPKSSERIKATRHPRWTRQETLVLIEAKKVIENGDQVCRYRSSTSGLVQTDPKWDLVSSLCQQHGVKRGAVQCRKRWGNLLTDYRKIKKWETNIKNESESFWIMRNDVRKENKLPGFFDAVVYNVLDGGVCTAAAFPLTLIKTTPRVENGDQVEAVAALEQGNKEDEIEEDEDEAIVDSDKMGWSTEEENMDTNTNGNMVNSPFKTPNAKKTSIGGTLKMTPIILPSSTERQQQPFFQGNYDPGCQREPLFNEGYKRKRLSPGDFEETTDFNEDVIKVLRRNSNILKAHLGAQNINSQLARDQQKQQTDSLVSALGRLTDAITKIADKM 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05268 372 MobiDBLite consensus disorder prediction 1 53 - -
Trre8g05268 372 MobiDBLite consensus disorder prediction 21 35 - -
Trre8g05268 372 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 29 372 - -
Trre8g05268 372 ProSiteProfiles Myb-like domain profile. 58 124 IPR001005 -
Trre8g05268 372 MobiDBLite consensus disorder prediction 234 256 - -
Trre8g05268 372 Gene3D - 59 129 - -
Trre8g05268 372 Pfam Myb/SANT-like DNA-binding domain 57 145 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05268 Trre-Chr8 54864212 54866627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05268 58 132 Trihelix Transcription Factor Family AT5G03680 34.211 1.13e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre8g05268 Myb_DNA-bind_4 3.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05268 - - tpra:123916032 696.041