LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g05267	ATGCCTTTTGAAGTCATGGATCAGAGGGGTGTTTCTGACCTTTTTGATGATATTTCCTTTCATTCTGAGAGGAATGTTGGATTAAGGAAGCCAAAATATACGAATGTCCAACACCGCCAAGGAATGAATGGAATGGTAGCACCGCCTGGTAGCACTTTGAATACTTCATCGCCATTTGAAGTAAATGGAAAATCTGGATTTCCGATGTCGCAAACTAATCTATCTGAGGAAAGTGTAGAAAAGCTACCTTTTGGCGTAGAACAAGGGATTGCTGGTGTATTGAAAGGTTCCAATGAATCCTTTCGTTATAATCCCCAATCATGGTCTGACGTGTTTAGGCAGTCAGCACCTACCTCGTATCGTCTAGTTGGGAATAAGCTTGTCGCGGTCGATGTTGTTCCCCACGAAAGTAGTCTATTCTCGAGCTCACTTTCTGATATGTTTAACCAGAAATTGAATCTATTGGCGAATGATCTTCTGTCCAATCAGCAGACTACTGCCGGTTCCCTTCTGGAGGAAGATCCGTATAAATCTCTTGAAGAGATGGAGGCTGACTATATACATAATCTCCTTCCTGATGAAGACGACCTATTTTCTGGTGTTGCTGATGAGTTAGAACACAATTCTTATGCTAGGATTAAAGATGACTCGGAAGATTTGGATTTGTTTAGTAGCGGCGGAGGCATGGAGCTGGAAGGAGATGAACGTTTAAGTTCGCTGAAAAGAACAAGTGGTTTGGATGGAGATAACGGTTTCTTCGGAGGTTCTAAAGGAAAGTTTCCTTTTGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAGCGTTGAAGACTTTGAGCTAAAGTCTCTATTTGAGCAATATGGCGATATCCGAACCATGTATACAGCTTGCAAGCATCGTGGGTTTGTGATGATTTCTTATTTTGATATAAGGGCAGCACAGAAAGCCATGCAAACACTACAAAGTAGGCCATTGAGGTCTAGGAAACTAGACATACATTATTCGATTCCAAAGGTCAATGCTCCAGAGAAGGATATTGGTCATGGTACGCTGATGTTATCTGGTCTTGATTCATCTGTTTTAAATGATGAGCTTATACATTATTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCCGGAATGAAGCACCTCAAATTTGTAGAATTTTATGACGTTCGAGCTGCAGAAGCTGCACTTCGGGCTTTGAACAGGGTTGAAATTTCTGGAAAACAGATTAAGCTTGAACCTGGCCATCCTAGGTTCGCAAGATGTCTGATGCAGCAGTCTTATAAGGTGCAAGATGAAAGAGATCATGGTCGTAGCATTATTGACAACTTACAATTGAGACAAAAGCCAACAGTGACTTCTGGAGCAATTGATTCTGCCGGCTTGGAAACTGGATATAACCAGAGGTTTCAATCTGCAATGCAGCAACAGCCTTTGAATGGATTTATTGATAATTCATTCTATCATGTCAATTCTAGCGTCAACAACACTGCGAGAGGGGCATCTACTGGAAAAGTTTCTGGTGTTTCTGAGTCCAGTAATCCTGTCGATGCAATGAAGTTTGCATCTAGTCCAACAACATTTCACCCTCATTCTTTACCAGAGTATCATGGAAGTTTAGCTAATGGAAGTCCTTATAACTTTTCAAGCACCATTAGCAACAAGGCTGGTAATATAGGCGCTGGAGTTACAGAAGCAGCTAATGGCAGGCATATTCATGGAATAAGCTCAACTGGGAACTTAGCAGAATTCAATGGAGGAGGGTCATCCGGAAACGAGATCCGCGCACATCATGGACTTAATCATATATGGAGCGGCTCCAACTTGCATCAGCAATCGCCATCAAGTAACATGCTTTGGCAGAAAACGCCATCGTCATCATTTGGTAATGGTTCTCCAGGCCTGCCTCAAATGTCAAGCTTTGCTAGAACACCTCCTCATATGCTGAGAACACAACATTTGGATCATCATGTTGGATCAGCGCCGGTTGTTACAGCCTCTCCCTGGGAAAGGAAAAACTCTTACTTGGGAGAGTCTCCTGAGGTGTCTGGTTTTCACGTGAGTTCTCCCGGAAATGGAGGTTTTCATGGTTCTTGGCAAATGCGTCCGATGGACTTTTCTCCTCATAACAACATGTTTTCTCATGTTGGTGGGAATGGTACTGAACTCTCATCCAGTGCTGGGCAGGGCTCGCCTAATCCGTTGTCACATATTATCTATGGTAGACAACCTACGACTACAATGTCGAAATTTGATCCTACCAATGAGCGAATGAAAAACGGTAACGGTTATAGTCGTAAGAGTGAAGCTAACACCATGAGTAGTGCTGACAGAAAACAATATGAACTTGACCTGGGCCGCATAATGCGTGGAGAAGACACTAGAACAACGCTTATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTACTTGTTGCCATAGATGAGAAATGTCGGGGAACTTATGATTTTCTGTATTTACCAATTGATTTTAAGAATAAATGTAATGTTGGATATGCATTCATAAATATGACTGATCCTGCTCAAATTATTCCTTTGCACCAGGCTTTCCATGGTAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTTGCATCACTTGCGTATGCCCGAATTCAAGGAAGAACTTCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCAGACAGAAGGCCCAAATGCTGGCGATATGGAGCCTTTCCCTATTGGAGCCAATGTTAGAGTGAGACCTGGAAAATCTCGCAATGCTGGCAACGAGGAGAATCGCAACCAAGCTCCTCCTTCAACTTTAACAAACGGAGAAGAGTCGTCGTCTGCAAATGGAAACTCCGACTGA	2922	0.4196	MPFEVMDQRGVSDLFDDISFHSERNVGLRKPKYTNVQHRQGMNGMVAPPGSTLNTSSPFEVNGKSGFPMSQTNLSEESVEKLPFGVEQGIAGVLKGSNESFRYNPQSWSDVFRQSAPTSYRLVGNKLVAVDVVPHESSLFSSSLSDMFNQKLNLLANDLLSNQQTTAGSLLEEDPYKSLEEMEADYIHNLLPDEDDLFSGVADELEHNSYARIKDDSEDLDLFSSGGGMELEGDERLSSLKRTSGLDGDNGFFGGSKGKFPFVEQPSRTLFVRNINSSVEDFELKSLFEQYGDIRTMYTACKHRGFVMISYFDIRAAQKAMQTLQSRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELIHYFGFYGEIKEIYEYPGMKHLKFVEFYDVRAAEAALRALNRVEISGKQIKLEPGHPRFARCLMQQSYKVQDERDHGRSIIDNLQLRQKPTVTSGAIDSAGLETGYNQRFQSAMQQQPLNGFIDNSFYHVNSSVNNTARGASTGKVSGVSESSNPVDAMKFASSPTTFHPHSLPEYHGSLANGSPYNFSSTISNKAGNIGAGVTEAANGRHIHGISSTGNLAEFNGGGSSGNEIRAHHGLNHIWSGSNLHQQSPSSNMLWQKTPSSSFGNGSPGLPQMSSFARTPPHMLRTQHLDHHVGSAPVVTASPWERKNSYLGESPEVSGFHVSSPGNGGFHGSWQMRPMDFSPHNNMFSHVGGNGTELSSSAGQGSPNPLSHIIYGRQPTTTMSKFDPTNERMKNGNGYSRKSEANTMSSADRKQYELDLGRIMRGEDTRTTLMIKNIPNKYTSKMLLVAIDEKCRGTYDFLYLPIDFKNKCNVGYAFINMTDPAQIIPLHQAFHGKKWEKFNSEKVASLAYARIQGRTSLIAHFQNSSLMNEDKRCRPILFQTEGPNAGDMEPFPIGANVRVRPGKSRNAGNEENRNQAPPSTLTNGEESSSANGNSD	973

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g05267	973	SUPERFAMILY	RNA-binding domain, RBD	806	890	IPR035979	GO:0003676
	Trre8g05267	973	CDD	RRM3_MEI2_like	807	892	IPR034454	-
	Trre8g05267	973	Pfam	RNA recognition motif 2	804	900	IPR007201	-
	Trre8g05267	973	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	353	426	IPR000504	GO:0003723
	Trre8g05267	973	MobiDBLite	consensus disorder prediction	946	973	-	-
	Trre8g05267	973	Gene3D	-	262	351	IPR012677	-
	Trre8g05267	973	MobiDBLite	consensus disorder prediction	754	785	-	-
	Trre8g05267	973	SMART	rrm1_1	806	882	IPR000504	GO:0003723
	Trre8g05267	973	SMART	rrm1_1	269	337	IPR000504	GO:0003723
	Trre8g05267	973	SMART	rrm1_1	354	422	IPR000504	GO:0003723
	Trre8g05267	973	CDD	RRM1_MEI2_like	267	342	IPR034453	-
	Trre8g05267	973	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	109	957	-	-
	Trre8g05267	973	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	270	334	IPR000504	GO:0003723
	Trre8g05267	973	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	355	420	IPR000504	GO:0003723
	Trre8g05267	973	SUPERFAMILY	RNA-binding domain, RBD	265	425	IPR035979	GO:0003676
	Trre8g05267	973	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	268	341	IPR000504	GO:0003723
	Trre8g05267	973	FunFam	Protein MEI2-like 1	352	446	-	-
	Trre8g05267	973	Gene3D	-	352	448	IPR012677	-
	Trre8g05267	973	MobiDBLite	consensus disorder prediction	918	973	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g05267	Trre-Chr8	54843023	54848572	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g05267	266	419	Eukaryotic Initiation Factors Gene Family	AT1G71770	27.607	8.76e-09	57.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g05267	-		-	gmx:100797893	1325.84