LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g05266	ATGCCTTTTGAAGTCATGGATCAGAGGGGTGTTTCTGACCTTTTTGATGATATTTCCTTTCATTCTGAGAGGAATGTTGGATTAAGGAAGCCAAAATATACGAATGTCCAACACCGCCAAGGAATGAATGGAATGGTAGCACCGCCTGGTAGCACTTTGAATACTTCATCGCCATTTGAAGTAAATGGAAAATCTGGATTTCCGATGTCGCAAACTAATCTATCTGAGGAAAGTGTAGAAAAGCTACCTTTTGGCGTAGAACAAGGGATTGCTGGTGTATTGAAAGGTTCCAATGAATCCTTTCGTTATAATCCCCAATCATGGTCTGACGTGTTTAGGCAGTCAGCACCTACCTCGTATCGTCTAGTTGGGAATAAGCTTGTCGCGGTCGATGTTGTTCCCCACGAAAGTAGTCTATTCTCGAGCTCACTTTCTGATATGTTTAACCAGAAATTGAATCTATTGGCGAATGATCTTCTGTCCAATCAGCAGACTACTGCCGGTTCCCTTCTGGAGGAAGATCCGTATAAATCTCTTGAAGAGATGGAGGCTGACTATATACATAATCTCCTTCCTGATGAAGACGACCTATTTTCTGGTGTTGCTGATGAGTTAGAACACAATTCTTATGCTAGGATTAAAGATGACTCGGAAGATTTGGATTTGTTTAGTAGCGGCGGAGGCATGGAGCTGGAAGGAGATGAACGTTTAAGTTCGCTGAAAAGAACAAGTGGTTTGGATGGAGATAACGGTTTCTTCGGAGGTTCTAAAGGAAAGTTTCCTTTTGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAGCGTTGAAGACTTTGAGCTAAAGTCTCTATTTGAGCAATATGGCGATATCCGAACCATGTATACAGCTTGCAAGCATCGTGGGTTTGTGATGATTTCTTATTTTGATATAAGGGCAGCACAGAAAGCCATGCAAACACTACAAAGTAGGCCATTGAGGTCTAGGAAACTAGACATACATTATTCGATTCCAAAGGTCAATGCTCCAGAGAAGGATATTGGTCATGGTACGCTGATGTTATCTGGTCTTGATTCATCTGTTTTAAATGATGAGCTTATACATTATTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCCGGAATGAAGCACCTCAAATTTGTAGAATTTTATGACGTTCGAGCTGCAGAAGCTGCACTTCGGGCTTTGAACAGGGTTGAAATTTCTGGAAAACAGATTAAGCTTGAACCTGGCCATCCTAGTCTGATGCAGCAGTCTTATAAGGTGCAAGATGAAAGAGATCATGGTCGTAGCATTATTGACAACTTACAATTGAGACAAAAGCCAACAGTGACTTCTGGAGCAATTGATTCTGCCGGCTTGGAAACTGGATATAACCAGAGGTTTCAATCTGCAATGCAGCAACAGCCTTTGAATGGATTTATTGATAATTCATTCTATCATGTCAATTCTAGCGTCAACAACACTGCGAGAGGGGCATCTACTGGAAAAGTTTCTGGTGTTTCTGAGTCCAGTAATCCTGTCGATGCAATGAAGTTTGCATCTAGTCCAACAACATTTCACCCTCATTCTTTACCAGAGTATCATGGAAGTTTAGCTAATGGAAGTCCTTATAACTTTTCAAGCACCATTAGCAACAAGGCTGGTAATATAGGCGCTGGAGTTACAGAAGCAGCTAATGGCAGGCATATTCATGGAATAAGCTCAACTGGGAACTTAGCAGAATTCAATGGAGGAGGGTCATCCGGAAACGAGATCCGCGCACATCATGGACTTAATCATATATGGAGCGGCTCCAACTTGCATCAGCAATCGCCATCAAGTAACATGCTTTGGCAGAAAACGCCATCGTCATCATTTGGTAATGGTTCTCCAGGCCTGCCTCAAATGTCAAGCTTTGCTAGAACACCTCCTCATATGCTGAGAACACAACATTTGGATCATCATGTTGGATCAGCGCCGGTTGTTACAGCCTCTCCCTGGGAAAGGAAAAACTCTTACTTGGGAGAGTCTCCTGAGGTGTCTGGTTTTCACGTGAGTTCTCCCGGAAATGGAGGTTTTCATGGTTCTTGGCAAATGCGTCCGATGGACTTTTCTCCTCATAACAACATGTTTTCTCATGTTGGTGGGAATGGTACTGAACTCTCATCCAGTGCTGGGCAGGGCTCGCCTAATCCGTTGTCACATATTATCTATGGTAGACAACCTACGACTACAATGTCGAAATTTGATCCTACCAATGAGCGAATGAAAAACGGTAACGGTTATAGTCGTAAGAGTGAAGCTAACACCATGAGTAGTGCTGACAGAAAACAATATGAACTTGACCTGGGCCGCATAATGCGTGGAGAAGACACTAGAACAACGCTTATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTACTTGTTGCCATAGATGAGAAATGTCGGGGAACTTATGATTTTCTGTATTTACCAATTGATTTTAAGAATAAATGTAATGTTGGATATGCATTCATAAATATGACTGATCCTGCTCAAATTATTCCTTTGCACCAGGCTTTCCATGGTAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTTGCATCACTTGCGTATGCCCGAATTCAAGGAAGAACTTCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCAGACAGAAGGCCCAAATGCTGGCGATATGGAGCCTTTCCCTATTGGAGCCAATGTTAGAGTGAGACCTGGAAAATCTCGCAATGCTGGCAACGAGGAGAATCGCAACCAAGCTCCTCCTTCAACTTTAACAAACGGAGAAGAGTCGTCGTCTGCAAATGGAAACTCCGACTGA	2910	0.4192	MPFEVMDQRGVSDLFDDISFHSERNVGLRKPKYTNVQHRQGMNGMVAPPGSTLNTSSPFEVNGKSGFPMSQTNLSEESVEKLPFGVEQGIAGVLKGSNESFRYNPQSWSDVFRQSAPTSYRLVGNKLVAVDVVPHESSLFSSSLSDMFNQKLNLLANDLLSNQQTTAGSLLEEDPYKSLEEMEADYIHNLLPDEDDLFSGVADELEHNSYARIKDDSEDLDLFSSGGGMELEGDERLSSLKRTSGLDGDNGFFGGSKGKFPFVEQPSRTLFVRNINSSVEDFELKSLFEQYGDIRTMYTACKHRGFVMISYFDIRAAQKAMQTLQSRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELIHYFGFYGEIKEIYEYPGMKHLKFVEFYDVRAAEAALRALNRVEISGKQIKLEPGHPSLMQQSYKVQDERDHGRSIIDNLQLRQKPTVTSGAIDSAGLETGYNQRFQSAMQQQPLNGFIDNSFYHVNSSVNNTARGASTGKVSGVSESSNPVDAMKFASSPTTFHPHSLPEYHGSLANGSPYNFSSTISNKAGNIGAGVTEAANGRHIHGISSTGNLAEFNGGGSSGNEIRAHHGLNHIWSGSNLHQQSPSSNMLWQKTPSSSFGNGSPGLPQMSSFARTPPHMLRTQHLDHHVGSAPVVTASPWERKNSYLGESPEVSGFHVSSPGNGGFHGSWQMRPMDFSPHNNMFSHVGGNGTELSSSAGQGSPNPLSHIIYGRQPTTTMSKFDPTNERMKNGNGYSRKSEANTMSSADRKQYELDLGRIMRGEDTRTTLMIKNIPNKYTSKMLLVAIDEKCRGTYDFLYLPIDFKNKCNVGYAFINMTDPAQIIPLHQAFHGKKWEKFNSEKVASLAYARIQGRTSLIAHFQNSSLMNEDKRCRPILFQTEGPNAGDMEPFPIGANVRVRPGKSRNAGNEENRNQAPPSTLTNGEESSSANGNSD	969

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g05266	969	CDD	RRM3_MEI2_like	803	888	IPR034454	-
	Trre8g05266	969	SUPERFAMILY	RNA-binding domain, RBD	802	886	IPR035979	GO:0003676
	Trre8g05266	969	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	353	426	IPR000504	GO:0003723
	Trre8g05266	969	MobiDBLite	consensus disorder prediction	942	969	-	-
	Trre8g05266	969	FunFam	Protein MEI2-like 1	352	444	-	-
	Trre8g05266	969	SMART	rrm1_1	269	337	IPR000504	GO:0003723
	Trre8g05266	969	SMART	rrm1_1	354	422	IPR000504	GO:0003723
	Trre8g05266	969	SMART	rrm1_1	802	878	IPR000504	GO:0003723
	Trre8g05266	969	MobiDBLite	consensus disorder prediction	750	781	-	-
	Trre8g05266	969	CDD	RRM1_MEI2_like	267	342	IPR034453	-
	Trre8g05266	969	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	109	953	-	-
	Trre8g05266	969	Gene3D	-	262	351	IPR012677	-
	Trre8g05266	969	Pfam	RNA recognition motif 2	800	896	IPR007201	-
	Trre8g05266	969	SUPERFAMILY	RNA-binding domain, RBD	265	424	IPR035979	GO:0003676
	Trre8g05266	969	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	270	334	IPR000504	GO:0003723
	Trre8g05266	969	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	355	420	IPR000504	GO:0003723
	Trre8g05266	969	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	268	341	IPR000504	GO:0003723
	Trre8g05266	969	Gene3D	-	352	447	IPR012677	-
	Trre8g05266	969	MobiDBLite	consensus disorder prediction	914	969	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g05266	Trre-Chr8	54843023	54848572	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g05266	266	419	Eukaryotic Initiation Factors Gene Family	AT1G71770	27.607	9.25e-09	57.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g05266	-		-	gmx:106798747	1328.15