Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05235 ATGGGTAGATCCCCTTGCTGTGAAAAACAACACACCAACAAAGGTGCTTGGTCTAAAGAAGAAGATGACCGTCTCATCAAATACATCAAAGACAACGGCGAAGGTTGTTGGCGTTCTCTTCCCAAAGCCGCTGGCTTGGCTAGATGTGGTAAAAGTTGCAGACTCAGATGGATTAATTACCTCAGACCTGATCTTAAGAGAGGAAACTTCACTCCTCAAGAAGATGAACTCATCATTAGCCTCCACGCTGCTGTTGGTAACAAATGGTCTTTAATTGCTCAGAAATTGCCTGGAAGAACGGACAATGAAATCAAGAATTATTGGAACACGCACATCAAACGTAAACTCCAAAGCCGCAGAATCGATCCTTCAACTCATCGTCCATTCGGCCGTTTTTCTGACACCGCTGCTGCCGGCAGTACTTCCTCAACAACCACTGCCTCTGCAGCCGCTGTCTCTACCACTTTATTGCCAGTGGTTTCCACGCAAGTGGTCCCCACAAGCAACGAGAGCAGTAGTAGCAGTATTAGGGATTCAGTTTCAAACACTAGCAGTGGCGTTACCGTTGAAGAAACAACCTATCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACAAATCAACTTGGAACTTTCATTGGCTTTACCTTCTCAACAGCCACAAGGTGGGTGTCTCTATCCTCAAACTTTAGGGTTACAAAATGGTGTCATGCCTGGATCTTCTGCTGCTAGTGCTACCACCGGCGCCGGTTATTGTTATTTTAAATATTTCGGAGCTGGGATTCTCAAATTTTGA 795 0.4616 MGRSPCCEKQHTNKGAWSKEEDDRLIKYIKDNGEGCWRSLPKAAGLARCGKSCRLRWINYLRPDLKRGNFTPQEDELIISLHAAVGNKWSLIAQKLPGRTDNEIKNYWNTHIKRKLQSRRIDPSTHRPFGRFSDTAAAGSTSSTTTASAAAVSTTLLPVVSTQVVPTSNESSSSSIRDSVSNTSSGVTVEETTYHPPPPPPPPPPQINLELSLALPSQQPQGGCLYPQTLGLQNGVMPGSSAASATTGAGYCYFKYFGAGILKF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05235 264 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Trre8g05235 264 CDD SANT 69 112 IPR001005 -
Trre8g05235 264 MobiDBLite consensus disorder prediction 167 191 - -
Trre8g05235 264 CDD SANT 16 61 IPR001005 -
Trre8g05235 264 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 178 - -
Trre8g05235 264 SMART sant 13 63 IPR001005 -
Trre8g05235 264 SMART sant 66 114 IPR001005 -
Trre8g05235 264 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre8g05235 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre8g05235 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre8g05235 264 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre8g05235 264 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre8g05235 264 Gene3D - 69 129 - -
Trre8g05235 264 MobiDBLite consensus disorder prediction 118 143 - -
Trre8g05235 264 MobiDBLite consensus disorder prediction 167 208 - -
Trre8g05235 264 Gene3D - 14 66 - -
Trre8g05235 264 FunFam MYB transcription factor 68 129 - -
Trre8g05235 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre8g05235 264 MobiDBLite consensus disorder prediction 193 208 - -
Trre8g05235 264 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05235 Trre-Chr8 54598520 54600689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05235 1 236 MYB Transcription Factor Family AT4G38620 52.823 9.98e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g05235 Myb_DNA-binding 2.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05235 K09422 - gmx:100808083 264.233